Frequency matrix plots for representative combinations of RNA effects.

Abstract

Frequency matrix plots for (a) hollow CCMV capsid assembly, (b) CCMV capsid assembly with all combined RNA effects, (c) CCMV capsid assembly under both negative RNA effects (1100), and (d) CCMV capsid assembly under both positive RNA effects. In each plot, each row corresponds to a product size and each column to reactant sizes that produce that product. Pixel color in each position corresponds to the frequency with which the given reactant size is used to produce the given product size. Insets within each plot expand the upper-left corner of the main plot, corresponding to products of size 20 or smaller, to better visualize pathways involved in production of small oligomers.</p