Ligands are the key to almost any strategy in the assembly of programmable
nanocrystals (or nanoparticles) and must be accurately considered in any
predictive model. Hard Spheres (or Shapes) provide the simplest and yet quite
successful approach to assembly, with remarkable sophisticated predictions
verified in experiments. There are, however, many situations where hard
spheres/shapes predictions fail. This prompts three important questions: {\em
In what situations should hard spheres/shapes models be expected to work?} and
when they do not work, {\em Is there a general model that successfully corrects
hard sphere/shape predictions?} and given other successful models where ligands
are included explicitly, and of course, numerical simulations, {\em can we
unify hard sphere/shape models, explicit ligand models and all atom
simulations?}. The Orbifold Topological Model (OTM) provides a positive answer
to these three questions. In this paper, I give a detailed review of OTM,
describing the concept of ligand vortices and how it leads to spontaneous
valence and nanoparticle "eigenshapes" while providing a prediction of the
lattice structure, without fitting parameters, which accounts for many body
effects not captured in (two-body) potentials. I present a thorough survey of
experiments and simulations and show that, to this date, they are in full
agreement with the OTM predictions. I will conclude with a discussion on
whether NC superlattices are equilibrium structures and some significant
challenges in structure prediction.Comment: 63 pages 27 figures, Accepted to Current Opinions in Solid State and
Materials Scienc