This dataset includes the full pollen types identified from the study of modern pollen analogues from the Balearic Islands. This dataset counts on 46 locations from Mallorca, Menorca, Eivissa, Formentera and Cabrera. Samples were collected during 2016 and 2017, and they were selected to gather information about the pollen rain of the main vegetation types forming the typical Mediterranean mosaic landscape that dominates the archipelago. Further details on the methods and information about the samples can be obtained in this paper: https://journals.sagepub.com/doi/abs/10.1177/0959683622108822