Finding Optimal Tree Decompositions

The task of organizing a given graph into a structure called a tree decomposition is relevant in multiple areas of computer science. In particular, many NP-hard problems can be solved in polynomial time if a suitable tree decomposition of a graph describing the problem instance is given as a part of the input. This motivates the task of finding as good tree decompositions as possible, or ideally, optimal tree decompositions. This thesis is about finding optimal tree decompositions of graphs with respect to several notions of optimality. Each of the considered notions measures the quality of a tree decomposition in the context of an application. In particular, we consider a total of seven problems that are formulated as finding optimal tree decompositions: treewidth, minimum fill-in, generalized and fractional hypertreewidth, total table size, phylogenetic character compatibility, and treelength. For each of these problems we consider the BT algorithm of Bouchitté and Todinca as the method of finding optimal tree decompositions. The BT algorithm is well-known on the theoretical side, but to our knowledge the first time it was implemented was only recently for the 2nd Parameterized Algorithms and Computational Experiments Challenge (PACE 2017). The author’s implementation of the BT algorithm took the second place in the minimum fill-in track of PACE 2017. In this thesis we review and extend the BT algorithm and our implementation. In particular, we improve the eciency of the algorithm in terms of both theory and practice. We also implement the algorithm for each of the seven problems considered, introducing a novel adaptation of the algorithm for the maximum compatibility problem of phylogenetic characters. Our implementation outperforms alternative state-of-the-art approaches in terms of numbers of test instances solved on well-known benchmarks on minimum fill-in, generalized hypertreewidth, fractional hypertreewidth, total table size, and the maximum compatibility problem of phylogenetic characters. Furthermore, to our understanding the implementation is the first exact approach for the treelength problem

d-Lucky Labeling of Graphs

AbstractLet l: V (G) →N be a labeling of the vertices of a graph G by positive integers. Define , where d(u) denotes the degree of u and N(u) denotes the open neighborhood of u. In this paper we introduce a new labeling called d-lucky labeling and study the same as a vertex coloring problem. We define a labeling l as d-lucky if c(u) ≠ c(v) , for every pair of adjacent vertices u and v in G. The d-lucky number of a graph G, denoted by ηdl(G), is the least positive k such that G has a d-lucky labeling with {1,2, ..., k} as the set of labels. We obtain ηdl(G) = 2 for hypercube network, butterfly network, benes network, mesh network, hypertree and X-tree

3-Colourability of Dually Chordal Graphs in Linear Time

A graph G is dually chordal if there is a spanning tree T of G such that any maximal clique of G induces a subtree in T. This paper investigates the Colourability problem on dually chordal graphs. It will show that it is NP-complete in case of four colours and solvable in linear time with a simple algorithm in case of three colours. In addition, it will be shown that a dually chordal graph is 3-colourable if and only if it is perfect and has no clique of size four

Beyond Helly graphs: the diameter problem on absolute retracts

Characterizing the graph classes such that, on $n$-vertex $m$-edge graphs in the class, we can compute the diameter faster than in ${\cal O}(nm)$ time is an important research problem both in theory and in practice. We here make a new step in this direction, for some metrically defined graph classes. Specifically, a subgraph $H$ of a graph $G$ is called a retract of $G$ if it is the image of some idempotent endomorphism of $G$. Two necessary conditions for $H$ being a retract of $G$ is to have $H$ is an isometric and isochromatic subgraph of $G$. We say that $H$ is an absolute retract of some graph class ${\cal C}$ if it is a retract of any $G \in {\cal C}$ of which it is an isochromatic and isometric subgraph. In this paper, we study the complexity of computing the diameter within the absolute retracts of various hereditary graph classes. First, we show how to compute the diameter within absolute retracts of bipartite graphs in randomized $\tilde{\cal O}(m\sqrt{n})$ time. For the special case of chordal bipartite graphs, it can be improved to linear time, and the algorithm even computes all the eccentricities. Then, we generalize these results to the absolute retracts of $k$-chromatic graphs, for every fixed $k \geq 3$. Finally, we study the diameter problem within the absolute retracts of planar graphs and split graphs, respectively

Total Domishold Graphs: a Generalization of Threshold Graphs, with Connections to Threshold Hypergraphs

A total dominating set in a graph is a set of vertices such that every vertex of the graph has a neighbor in the set. We introduce and study graphs that admit non-negative real weights associated to their vertices such that a set of vertices is a total dominating set if and only if the sum of the corresponding weights exceeds a certain threshold. We show that these graphs, which we call total domishold graphs, form a non-hereditary class of graphs properly containing the classes of threshold graphs and the complements of domishold graphs, and are closely related to threshold Boolean functions and threshold hypergraphs. We present a polynomial time recognition algorithm of total domishold graphs, and characterize graphs in which the above property holds in a hereditary sense. Our characterization is obtained by studying a new family of hypergraphs, defined similarly as the Sperner hypergraphs, which may be of independent interest.Comment: 19 pages, 1 figur

On the algorithmic complexity of twelve covering and independence parameters of graphs

The definitions of four previously studied parameters related to total coverings and total matchings of graphs can be restricted, thereby obtaining eight parameters related to covering and independence, each of which has been studied previously in some form. Here we survey briefly results concerning total coverings and total matchings of graphs, and consider the aforementioned 12 covering and independence parameters with regard to algorithmic complexity. We survey briefly known results for several graph classes, and obtain new NP-completeness results for the minimum total cover and maximum minimal total cover problems in planar graphs, the minimum maximal total matching problem in bipartite and chordal graphs, and the minimum independent dominating set problem in planar cubic graphs

On Computing the Average Distance for Some Chordal-Like Graphs

The Wiener index of a graph G is the sum of all its distances. Up to renormalization, it is also the average distance in G. The problem of computing this parameter has different applications in chemistry and networks. We here study when it can be done in truly subquadratic time (in the size n+m of the input) on n-vertex m-edge graphs. Our main result is a complete answer to this question, assuming the Strong Exponential-Time Hypothesis (SETH), for all the hereditary subclasses of chordal graphs. Interestingly, the exact same result also holds for the diameter problem. The case of non-hereditary chordal subclasses happens to be more challenging. For the chordal Helly graphs we propose an intricate O?(m^{3/2})-time algorithm for computing the Wiener index, where m denotes the number of edges. We complete our results with the first known linear-time algorithm for this problem on the dually chordal graphs. The former algorithm also computes the median set