413 research outputs found

    Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows

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    We thank Mari Talvisilta and the staff in the metabolism unit at Natural Resources Institute Finland for technical support, care of experimental animals and assistance in sample collection. We thank Paula Lidauer for ruminal cannulation surgeries, Richard Hill from Aberystwyth University, UK for performing qPCR and Aurélie Bonin from Laboratoire d'Ecologie Alpine, CNRS, France for preparing archaea amplicon libraries for sequencing. Kevin J. Shingfield passed away before the submission of the final version of this manuscript. Ilma Tapio accepts responsibility for the integrity and validity of the data collected and analyzed. Funding: Study was funded by the Finnish Ministry of Agriculture and Forestry as part of the GreenDairy Project (Developing Genetic and Nutritional Tools to Mitigate the Environmental Impact of Milk Production; Project No. 2908234). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Peer reviewedPublisher PD

    Between-cow variation in milk fatty acids associated with methane production

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    We evaluated the between-cow (b-cow) variation and repeatability in omasal and milk fatty acids (FA) related to methane (CH4) emission. The dataset was originated from 9 studies with rumen-cannulated dairy cows conducted using either a switch-back or a Latin square design. Production of CH(4)per mole of VFA (Y_CH(4)VFA) was calculated based on VFA stoichiometry. Experiment, diet within experiment, period within experiment, and cow within experiment were considered as random factors. Empirical models were developed between the variables of interest by univariate and bivariate mixed model regression analysis. The variation associated with diet was higher than the b-cow variation with low repeatability (< 0.25) for milk odd- and branch-chain FA (OBCFA). Similarly, for de novo synthesized milk FA, diet variation was similar to 3-fold greater than the b-cow variation; repeatability for these FA was moderate to high (0.34-0.58). Also, for bothcis-9 C18:1 andcis-9cis-12cis-15 C18:3 diet variation was more than double the b-cow variation, but repeatability was moderate. Among the de novo milk FA, C4:0 was positively related with stoichiometric Y_CH(4)VFA, while for OBCFA,anteisoC15:0 and C15:0 were negatively related with it. Notably, when analyzing the relationship between omasal FA and milk FA we observed positive intercept estimates for all the OBCFA, which may indicate endogenous post-ruminal synthesis of these FA, most likely in the mammary gland. For milkisoC13:0,isoC15:0,anteisoC15:0, and C15:0 were positively influenced by omasal proportion of their respective FA and by energy balance. In contrast, the concentration of milk C17:0,isoC18:0, C18:0,cis-11 C18:1, andcis-9cis-12cis-15 C18:3 were positively influenced by omasal proportion of their respective FA but negatively related to calculated energy balance. Our findings demonstrate that for most milk FA examined, a larger variation is attributed to diet than b-cow differences with low to moderate repeatability. While some milk FA were positively or negatively related with Y_CH(4)VFA, there was a pronounced effect of calculated energy balance on these estimates. Additionally, even though OBCFA have been indicated as markers of rumen function, our results suggest that endogenous synthesis of these FA may occur, which therefore, may limit the utilization of milk FA as a proxy for CH(4)predictions for cows fed the same diet
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