Digitization of LAr calorimeter for CSC simulations

This note describes the digitization of the LAr signals, which is the step creating RDO from Geant4 Hits, as used during the production of the CSC simulated samples with athena release 12

Stimulus - response curves of a neuronal model for noisy subthreshold oscillations and related spike generation

We investigate the stimulus-dependent tuning properties of a noisy ionic conductance model for intrinsic subthreshold oscillations in membrane potential and associated spike generation. On depolarization by an applied current, the model exhibits subthreshold oscillatory activity with occasional spike generation when oscillations reach the spike threshold. We consider how the amount of applied current, the noise intensity, variation of maximum conductance values and scaling to different temperature ranges alter the responses of the model with respect to voltage traces, interspike intervals and their statistics and the mean spike frequency curves. We demonstrate that subthreshold oscillatory neurons in the presence of noise can sensitively and also selectively be tuned by stimulus-dependent variation of model parameters.Comment: 19 pages, 7 figure

IL-23-mediated mononuclear phagocyte crosstalk protects mice from Citrobacter rodentium-induced colon immunopathology.

Gut homeostasis and mucosal immune defense rely on the differential contributions of dendritic cells (DC) and macrophages. Here we show that colonic CX3CR1(+) mononuclear phagocytes are critical inducers of the innate response to Citrobacter rodentium infection. Specifically, the absence of IL-23 expression in macrophages or CD11b(+) DC results in the impairment of IL-22 production and in acute lethality. Highlighting immunopathology as a death cause, infected animals are rescued by the neutralization of IL-12 or IFNγ. Moreover, mice are also protected when the CD103(+) CD11b(-) DC compartment is rendered deficient for IL-12 production. We show that IL-12 production by colonic CD103(+) CD11b(-) DC is repressed by IL-23. Collectively, in addition to its role in inducing IL-22 production, macrophage-derived or CD103(-) CD11b(+) DC-derived IL-23 is required to negatively control the otherwise deleterious production of IL-12 by CD103(+) CD11b(-) DC. Impairment of this critical mononuclear phagocyte crosstalk results in the generation of IFNγ-producing former TH17 cells and fatal immunopathology

Calorimeter Clustering Algorithms: Description and Performance

This note describes the performance of the calorimeter clustering algorithms used for ATLAS, and which provide inputs for particle identification. ATLAS uses two principal algorithms. The first is the ``sliding-window'' algorithm, which clusters calorimeter cells within fixed-size rectangles; results from this are used for electron, photon, and tau lepton identification. The second is the ``topological'' algorithm, which clusters together neighboring cells, as long as the signal in the cells is significant compared to noise. The results of this second algorithm are further used for jet and missing transverse energy reconstruction. This note first summarizes the steps of the calorimeter reconstruction software. A detailed description of the two clustering algorithms is then given. A last section summarizes their performance. The results presented in this note are obtained with the ATLAS athena software releases 12 and 13

2004 ATLAS Combined Testbeam : Computation and Validation of the Electronic Calibration Constants for the Electromagnetic Calorimeter

From July to November 2004, a full slice of the ATLAS barrel detector was studied in testbeam. A complete electromagnetic barrel module was used, read by the final electronics and operated by ATLAS TDAQ software. This note describes in details the electronic calibration procedure and the cell energy reconstruction: each step of the procedure and its associated software is explicitly described. The general calibration procedure is very similar to the one applied in previous barrel and endcap standalone testbeams. Emphasis is put on tools developed in the context of the combined testbeam which can be used for commissioning and operation of the calorimeters in ATLAS. Many validation studies were performed on each calibration constant. Previously unobserved effects such as the FEB temperature dependence of some constants were observed. Overall, the calibration performances are at the expected level

Superpulsed low-level laser therapy protects skeletal muscle of mdx mice against damage, inflammation and morphological changes delaying dystrophy progression.

Aim: To evaluate the effects of preventive treatment with low-level laser therapy (LLLT) on progression of dystrophy in mdx mice. Methods: Ten animals were randomly divided into 2 experimental groups treated with superpulsed LLLT (904 nm, 15 mW, 700 Hz, 1 J) or placebo-LLLT at one point overlying the tibialis anterior muscle (bilaterally) 5 times per week for 14 weeks (from 6th to 20th week of age). Morphological changes, creatine kinase (CK) activity and mRNA gene expression were assessed in animals at 20th week of age. Results: Animals treated with LLLT showed very few morphological changes in skeletal muscle, with less atrophy and fibrosis than animals treated with placebo-LLLT. CK was significantly lower (p = 0.0203) in animals treated with LLLT (864.70 U.l−1, SEM 226.10) than placebo (1708.00 U.l−1, SEM 184.60). mRNA gene expression of inflammatory markers was significantly decreased by treatment with LLLT (p<0.05): TNF-α (placebo-control = 0.51 µg/µl [SEM 0.12], - LLLT = 0.048 µg/µl [SEM 0.01]), IL-1β (placebo-control = 2.292 µg/µl [SEM 0.74], - LLLT = 0.12 µg/µl [SEM 0.03]), IL-6 (placebo-control = 3.946 µg/µl [SEM 0.98], - LLLT = 0.854 µg/µl [SEM 0.33]), IL-10 (placebo-control = 1.116 µg/µl [SEM 0.22], - LLLT = 0.352 µg/µl [SEM 0.15]), and COX-2 (placebo-control = 4.984 µg/µl [SEM 1.18], LLLT = 1.470 µg/µl [SEM 0.73]). Conclusion: Irradiation of superpulsed LLLT on successive days five times per week for 14 weeks decreased morphological changes, skeletal muscle damage and inflammation in mdx mice. This indicates that LLLT has potential to decrease progression of Duchenne muscular dystrophy

In situ commissioning of the ATLAS electromagnetic calorimeter with cosmic muons

In 2006, ATLAS entered the {\it in situ} commissioning phase. The primary goal of this phase is to verify the detector operation and performance with cosmic muons. Using a dedicated cosmic muon trigger from the hadronic Tile calorimeter, a sample of approximately $120\,000$ events was collected in several modules of the barrel electromagnetic (EM) calorimeter between August 2006 and March 2007. As cosmic events are generally non-projective and arrive asynchronously with respect to the trigger clock, methods to improve the standard signal reconstruction for this situation are presented. Various selection criteria for projective muons and clustering algorithms have been tested, leading to preliminary results on calorimeter uniformity in $\eta$ and timing performance

Energy Linearity and Resolution of the ATLAS Electromagnetic Barrel Calorimeter in an Electron Test-Beam

A module of the ATLAS electromagnetic barrel liquid argon calorimeter was exposed to the CERN electron test-beam at the H8 beam line upgraded for precision momentum measurement. The available energies of the electron beam ranged from 10 to 245 GeV. The electron beam impinged at one point corresponding to a pseudo-rapidity of eta=0.687 and an azimuthal angle of phi=0.28 in the ATLAS coordinate system. A detailed study of several effects biasing the electron energy measurement allowed an energy reconstruction procedure to be developed that ensures a good linearity and a good resolution. Use is made of detailed Monte Carlo simulations based on Geant which describe the longitudinal and transverse shower profiles as well as the energy distributions. For electron energies between 15 GeV and 180 GeV the deviation of the measured incident electron energy over the beam energy is within 0.1%. The systematic uncertainty of the measurement is about 0.1% at low energies and negligible at high energies. The energy resolution is found to be about 10% sqrt(E) for the sampling term and about 0.2% for the local constant term

Studies of the Linearity of the ATLAS EM Barrel Calorimeter

The ATLAS experiment uses an accordion shaped lead/liquid argon sampling calorime- ter for electromagnetic calorimetry. During beam test campaigns in summer 2002 and summer 2004 dedicated linearity scans were carried out. During the 2004 run, not only the beam energy but also the material in front of the calorimeter has been varied. This contribution discusses methods to achieve an excellent linearity and resolution even in the presence of a significant amount of upstream material. These methods were developed and tested on data obtained from the described beam tests and on a Geant4 simulation of the beam test setup