3,818 research outputs found
Disorder and fluctuations in nonlinear excitations in DNA
We study the effects of the sequence on the propagation of nonlinear
excitations in simple models of DNA, and how those effects are modified by
noise. Starting from previous results on soliton dynamics on lattices defined
by aperiodic potentials, [F. Dom\'\i nguez-Adame {\em et al.}, Phys. Rev. E
{\bf 52}, 2183 (1995)], we analyze the behavior of lattices built from real DNA
sequences obtained from human genome data. We confirm the existence of
threshold forces, already found in Fibonacci sequences, and of stop positions
highly dependent on the specific sequence. Another relevant conclusion is that
the effective potential, a collective coordinate formalism introduced by
Salerno and Kivshar [Phys. Lett. A {\bf 193}, 263 (1994)] is a useful tool to
identify key regions that control the behaviour of a larger sequence. We then
study how the fluctuations can assist the propagation process by helping the
excitations to escape the stop positions. Our conclusions point out to
improvements of the model which look promising to describe mechanical
denaturation of DNA. Finally, we also consider how randomly distributed energy
focus on the chain as a function of the sequence.Comment: 14 pages, final version, accepted in Fluctuation and Noise Letters,
scheduled to apper in vol. 4, issue 3 (2004
External fluctuations in front dynamics with inertia: The overdamped limit
We study the dynamics of fronts when both inertial effects and external
fluctuations are taken into account. Stochastic fluctuations are introduced as
multiplicative noise arising from a control parameter of the system. Contrary
to the non-inertial (overdamped) case, we find that important features of the
system, such as the velocity selection picture, are not modified by the noise.
We then compute the overdamped limit of the underdamped dynamics in a more
careful way, finding that it does not exhibit any effect of noise either. Our
result poses the question as to whether or not external noise sources can be
measured in physical systems of this kind.Comment: 4 pages, 1 figure, accepted for publication in European Physical
Journal
ac driven sine-Gordon solitons: dynamics and stability
The ac driven sine-Gordon equation is studied analytically and numerically,
with the aim of providing a full description of how soliton solutions behave.
To date, there is much controversy about when ac driven dc motion is possible.
Our work shows that kink solitons exhibit dc or oscillatory motion depending on
the relation between their initial velocity and the force parameters. Such
motion is proven to be impossible in the presence of damping terms. For
breathers, the force amplitude range for which they exist when dissipation is
absent is found. All the analytical results are compared with numerical
simulations, which in addition exhibit no dc motion at all for breathers, and
an excellent agreement is found. In the conclusion, the generality of our
results and connections to others systems for which a similar phenomenology may
arise are discussed.Comment: 10 pages, latex, PostScript figures included with epsfig, to appear
in European Physical Journal B, see GISC homepage at
http://valbuena.fis.ucm.es/ for related wor
General non-existence theorem for phase transitions in one-dimensional systems with short range interactions, and physical examples of such transitions
We examine critically the issue of phase transitions in one-dimensional
systems with short range interactions. We begin by reviewing in detail the most
famous non-existence result, namely van Hove's theorem, emphasizing its
hypothesis and subsequently its limited range of applicability. To further
underscore this point, we present several examples of one-dimensional short
ranged models that exhibit true, thermodynamic phase transitions, with
increasing level of complexity and closeness to reality. Thus having made clear
the necessity for a result broader than van Hove's theorem, we set out to prove
such a general non-existence theorem, widening largely the class of models
known to be free of phase transitions. The theorem is presented from a rigorous
mathematical point of view although examples of the framework corresponding to
usual physical systems are given along the way. We close the paper with a
discussion in more physical terms of the implications of this non-existence
theorem.Comment: Short comment on possible generalization to wider classes of systems
added; accepted for publication in Journal of Statistical Physic
Massive star formation in Wolf-Rayet galaxies. IV: Colours, chemical composition analysis and metallicity-luminosity relations
(Abridged) We performed a multiwavelength analysis of a sample of starburst
galaxies that show the presence of a substantial population of very young
massive (WR) stars. Here we present the global analysis of the derived
photometric and chemical properties. We compare optical/NIR colours and the
physical properties (reddening coefficient, equivalent widths of the emission
and underlying absorption lines, ionization degree, electron density, and
electron temperature) and chemical properties with previous observations and
galaxy evolution models. Attending to their absolute B-magnitude many of them
are not dwarf galaxies, but they should be during their quiescent phase. We
found that both C(Hb) and Wabs increase with increasing metallicity. We
detected a high N/O ratio in objects showing strong WR features. The ejecta of
the WR stars may be the origin of the N enrichment in these galaxies. We
compared the abundances provided by the direct method with those obtained using
empirical calibrations, finding that (i) the Pilyugin method is the best
suitable empirical calibration, (ii) the relations between the oxygen abundance
and the N2 or the O3N2 parameters provided by Pettini & Pagel (2004) give
acceptable results for objects with 12+log(O/H)>8.0, and (iii) the results
provided by empirical calibrations based on photoionization models are
systematically 0.2-0.3 dex higher than the values derived from the direct
method. The O and N abundances and the N/O ratios are related to the
optical/NIR luminosity; the dispersion is consequence of the differences in the
star-formation histories. Galaxies with redder colours tend to have higher
oxygen and nitrogen abundances. Our detailed analysis is fundamental to
understand the nature of galaxies showing strong starbursts, as well as to know
their star formation history and the relationships with the environment.Comment: 30 pages, 22 figures, accepted to A&A. Updated with the final
version
Quasi-Ballistic Electron Transport in Random Superlattices
We theoretically study electron transport in disordered, quantum-well based,
semiconductor superlattices with structural short-range correlations. Our
system consists of equal width square barriers and quantum wells with two
different thicknesses. The two kinds of quantum wells are randomly distributed
along the growth direction. Structural correlations are introduced by adding
the constraint that one of the wells always appears in pairs. We show that such
correlated disordered superlattices exhibit a strong enhancement of their dc
conductance as compared to usual random ones, giving rise to quasi-ballistic
electron transport. Our predictions can be used to demonstrate experimentally
that structural correlations inhibit the localization effects of disorder. We
specifically describe the way superlattices should be built and experiments
should be carried out for that purpose.Comment: REVTeX 3.0, 7 pages, 4 figures on request from FD-A
([email protected]). Submitted to Physical Review B. Preprint
MA/UC3M/12/199
- …