5 research outputs found
The mapping count table
This count table was used as an input for differential gene expression analysis in edge
Table containing differential expressed genes (result of edgeR)
This table contains data of list of genes that were < 0.01 FDR value and differed in their expression value at least 2 fold between two group
Information on SNPs identified from transcriptome data (vcf file)
The details of SNPs calling are described in Materials and method
Sequences of S. lalandi transcriptome (fasta file)
Transcriptome contigs assembled from filtered paired end sequencing reads on Illumina HiSeqâ„¢ 2000 platform using Trinity. Only non-redundant (cluster in CAP3), more than 300bp contigs with open reading frame were kep
GO term reduction table
Gene Ontology terms were summarized and redundant GO terms were removed by semantic similarity-based approach employed in REViGO