Individual and population variation in invertebrates revealed by Inter-simple Sequence Repeats (ISSRs)

PCR-based molecular markers are well suited for questions requiring large scale surveys of plant and animal populations. Inter-simple Sequence Repeats or ISSRs are analyzed by a recently developed technique based on the amplification of the regions between inverse-oriented microsatellite loci with oligonucleotides anchored in microsatellites themselves. ISSRs have shown much promise for the study of the population biology of plants, but have not yet been explored for similar studies of animals. The value of ISSRs is demonstrated for the study of animal species with low levels of within-population variation. Sets of primers are identified which reveal variation in two aphid species, Acyrthosiphon pisum and Pemphigus obesinymphae, in the yellow fever mosquito Aedes aegypti, and in a rotifer in the genus Philodina

Viruses and the functional toolkit in social insect biology

Relatório de estágio do mestrado em Economia (Economia Financeira e Economia Industrial), apresentado à Faculdade de Economia da Universidade de Coimbra, sob a orientação de Fátima Sol.É indiscutível a importância da gestão do risco de crédito no setor financeiro. Os impactos da crise financeira e da crise soberana que se seguiu (no caso português) realçaram o peso da influência das determinantes macroeconómicas no risco de crédito. O presente relatório centra-se na discussão dessa influência. Para tal foi realizada uma revisão da literatura acerca do tema. Este relatório pretende também descrever e analisar criticamente o período de quatro meses de estágio. O presente trabalho é organizado em cinco secções. A primeira secção introduz o tema, à qual se segue a segunda secção onde é elaborada a apresentação do Crédito Agrícola enquanto entidade de acolhimento. A terceira secção relaciona-se com a descrição das atividades desenvolvidas ao longo do estágio. A revisão da literatura sobre as determinantes macroeconómicas do risco de crédito e a análise do crédito vencido da Terras do Sousa, Ave, Basto e Tâmega é apresentada na quarta secção. Finalmente, na quinta secção é efetuada uma avaliação crítica do estágio e são apresentadas as conclusões

Comparative Dating Of Attine Ant And Lepiotaceous Cultivar Phylogenies Reveals Coevolutionary Synchrony And Discord

The mutualistic symbiosis between fungus-gardening ants and their cultivars has made fundamental contributions to our understanding of the coevolution of complex species interactions. Reciprocal specialization and vertical symbiont cotransmission are thought to promote a pattern of largely synchronous coevolutionary diversification in attines. Here we test this hypothesis by inferring the first time-calibrated multigene phylogeny of the lepiotaceous attine cultivars and comparing it with the recently published fossil-anchored phylogeny of the attine ants. While this comparison reveals some possible cases of synchronous origins of ant and fungal clades, there were a number of surprising asynchronies. For example, leaf-cutter cultivars appear to be significantly younger than the corresponding ant genera. Similarly, a clade of fungi interacting with primitive fungus-gardening ants-thought to be ancestral to the more derived leaf-cutter symbionts-appears instead to be a more recent acquisition from free-living stock. These macroevolutionary patterns are consistent with recent population-level studies suggesting occasional acquisition of novel cultivar types from environmental sources and horizontal transmission of cultivars between different ant species. Horizontal transmission events, even if rare, appear to form loose ecological connections between diffusely coevolving ant and fungus lineages that permit punctuated changes in the topology of the mutualistic ant-fungus interaction network.Integrative Biolog

Fortress defense in social aphids

Dissertação de mestrado em Evolução e Biologia Humanas, apresentada ao Departamento de Ciências da Vida da Faculdade de Ciências e Tecnologia da Universidade de Coimbra.A idade à morte é um dos parâmetros a ser estimado pelo antropólogo forense, aquando da construção do perfil de um determinado indivíduo. O objectivo de tal análise é tentar estabelecer uma relação entre a idade cronológica e a idade biológica dos resquícios ósseos. São várias as metodologias utilizadas, sendo que a abordagem morfológica, se apresenta como mais recorrente, pois é, de certa forma, mais intuitiva. Contudo, os métodos microscópicos podem, em determinadas situações, revelar-se de extrema utilidade. A estimativa da idade em adultos baseia-se na observação da senescência intrínseca ao indivíduo. Este processo fisiológico tem bases celulares, logo não é de estranhar que a histologia tenha vindo a ser usada como ferramenta para aceder às microestruturas, que permitem estabelecer uma relação com a idade. O ponto fulcral deste projecto é testar a aplicabilidade da histomorfometria óssea na estimativa da idade, através do uso de metodologias práticas e de fácil execução. Esta investigação pretende, com base numa amostra forense de clavículas provenientes de 18 indivíduos, 10 do sexo feminino e 8 do sexo masculino, estabelecer uma relação entre a idade à morte e dois componentes histológicos, a percentagem de osso não remodelado e aérea cortical relativa. Os resultados obtidos foram altamente condicionados pelo número da amostra tendo um carácter preliminar. Não foi possível estabelecer uma relação entre a percentagem de osso não remodelado e a idade, devido a um conjunto de situações condicionantes. Em relação à área cortical relativa, foi possível observar que esta exibe uma tendência para diminuir em indivíduos mais velhos, já que segundo os resultados obtidos, as principais diferenças encontram-se nos dois extremos etários. Os indivíduos mais jovens apresentam uma área cortical relativa superior (63,66%) quando comparados aos indivíduos mais velhos (57,96%). Esta variável parece ser ainda influenciada pelo sexo, chegando mesmo a existir, no grupo etário dos 40 aos 49 anos, uma diferença de aproximadamente 16%. Sempre que possível, os resultados obtidos, ou a falta destes, foram analisados criticamente, sendo que o condicionamento da amostra revelou-se um grande impedimento ao presente estudo. Um balanço geral da metodologia usada, quer ao nível da preparação para a histologia, quer na análise microscópica e com recurso ao scâner. Esta última revelou-se de mais fácil aplicação, embora careça de resultados mais fidedignos. O desenvolvimento de investigações, que visem a aplicação da histologia na estimativa da idade, é um processo premente e basilar, dado existirem empiricamente menos estudos na área, comparativamente aos métodos morfológicos. Deste modo, pensa-se que apesar dos resultados obtidos, novos projectos poderão ser alcançados, com base na temática em estudo.Age at death is one of the key objectives that need to be estimated by the forensic anthropologist, when building the profile of an individual. The aim of this analysis is to establish a relationship between chronological age and the age observed in human skeletal remains. Several methods are used for this purpose, and the morphological approach seems to be the most recurrent, because somehow it is more intuitive. However, the microscopic methods can, under certain circumstances, be extremely useful. The age estimation in adults is based on the observation of the natural senescence, inherent to the individual. This physiological process has a cellular basis, so it is not unpredictable that histology has been used as a tool to access these microstructures, which ultimately may de related with age. The main goal of this project is to test the applicability of bone histomorphometry in the estimation of age at death, through the use of methods that are, at its core, practical and easy to perform. The current investigation is based on forensic samples of clavicles from 18 individuals (10 females and 8 males). It was intended to establish a relationship between age at death and two histological components, the percentage of unremodeled bone and the relative cortical area. The results were highly conditioned by the sample. Therefore emphasis is placed in the preliminary character of those. It was not possible to establish an association between the percentage of unremodeled bone and age at death, due to a set of circumstances that restricted all the analysis. Regarding the analysis of the cortical relative area, it was possible to verify that this component presents a downward trend in older individuals, since the main differences were found in extreme ages. Thereby younger individuals present a higher value of cortical area (63,66%) when compared with older individuals (57,96%). This variable seems to be sexrelated, since in the age group of 40 to 49 years, it was possible to verify about 16% of difference between sexes. Whenever possible, all the results, or the lack of them, were critically analyzed. It is important to state that the sample size was a major drawback to this study. Nevertheless it was still possible to come up with some hypotheses that may in theory explain the results. A general deliberation of the methodology used was performed both in terms of the preparation for histology as well as towards the analysis of the microstructures per se. The examination that used the scanner proved to be easier to implement, although it lacks of reliable results. The development of investigations concerning the application of histology in age at death estimation is an urgent and fundamental process, since there are empirically fewer studies in the area when compared to macroscopic approach. Thus, in spite of the results we think that a path was opened to the enlargement of future studies that use histology as a tool for age estimation in a Portuguese sample

GEneSTATION 1.0: A Synthetic Resource of Diverse Evolutionary and Functional Genomic Data for Studying The Evolution of Pregnancy-Associated Tissues and Phenotypes

Mammalian gestation and pregnancy are fast evolving processes that involve the interaction of the fetal, maternal and paternal genomes. Version 1.0 of the GEneSTATION database (http://genestation.org) integrates diverse types of omics data across mammals to advance understanding of the genetic basis of gestation and pregnancy-associated phenotypes and to accelerate the translation of discoveries from model organisms to humans. GEneSTATION is built using tools from the Generic Model Organism Database project, including the biology-aware database CHADO, new tools for rapid data integration, and algorithms that streamline synthesis and user access. GEneSTATION contains curated life history information on pregnancy and reproduction from 23 high-quality mammalian genomes. For every human gene, GEneSTATION contains diverse evolutionary (e.g. gene age, population genetic and molecular evolutionary statistics), organismal (e.g. tissue-specific gene and protein expression, differential gene expression, disease phenotype), and molecular data types (e.g. Gene Ontology Annotation, protein interactions), as well as links to many general (e.g. Entrez, PubMed) and pregnancy disease-specific (e.g. PTBgene, dbPTB) databases. By facilitating the synthesis of diverse functional and evolutionary data in pregnancy-associated tissues and phenotypes and enabling their quick, intuitive, accurate and customized meta-analysis, GEneSTATION provides a novel platform for comprehensive investigation of the function and evolution of mammalian pregnancy

Violence in primary care: Prevalence and follow-up of victims

BACKGROUND: Primary care physicians underestimate the prevalence of domestic violence and community violence. Victims are therefore at risk of further episodes of violence, with psychological and physical consequences. We used an interview to assess the prevalence of domestic and community violence among Swiss natives and foreigners. In a follow-up study, we evaluated the consequences of the interview for the positive patients. METHODS: We evaluated the prevalence of violence by use of a questionnaire in an interview, in an academic general internal medicine clinic in Switzerland. In a follow-up, we evaluated the consequences of the interview for positive patients. The participants were 38 residents and 446 consecutive patients. Questionnaires were presented in the principal language spoken by our patients. They addressed sociodemographics, present and past violence, the security or lack of security felt by victims of violence, and the patients' own violence. Between 3 and 6 months after the first interview, we did a follow-up of all patients who had reported domestic violence in the last year. RESULTS: Of the 366 patients included in the study, 36 (9.8%) reported being victims of physical violence during the last year (physicians identified only 4 patients out of the 36), and 34/366 (9.3%) reported being victims of psychological violence. Domestic violence was responsible for 67.3% of the cases, and community violence for 21.8%. In 10.9% of the cases, both forms of violence were found. Of 29 patients who reported being victims of domestic violence, 22 were found in the follow-up. The frequency of violence had diminished (4/22) or the violence had ceased (17/22). CONCLUSION: The prevalence of violence is high; domestic violence is more frequent than community violence. There was no statistically significant difference between the Swiss and foreign patients' responses related to the rates of violence. Patients in a currently violent relationship stated that participating in the study helped them and that the violence decreased or ceased a few months later

Dual Role for Pilus in Adherence to Epithelial Cells and Biofilm Formation in Streptococcus agalactiae

Streptococcus agalactiae is a common human commensal and a major life-threatening pathogen in neonates. Adherence to host epithelial cells is the first critical step of the infectious process. Pili have been observed on the surface of several gram-positive bacteria including S. agalactiae. We previously characterized the pilus-encoding operon gbs1479-1474 in strain NEM316. This pilus is composed of three structural subunit proteins: Gbs1478 (PilA), Gbs1477 (PilB), and Gbs1474 (PilC), and its assembly involves two class C sortases (SrtC3 and SrtC4). PilB, the bona fide pilin, is the major component; PilA, the pilus associated adhesin, and PilC, are both accessory proteins incorporated into the pilus backbone. We first addressed the role of the housekeeping sortase A in pilus biogenesis and showed that it is essential for the covalent anchoring of the pilus fiber to the peptidoglycan. We next aimed at understanding the role of the pilus fiber in bacterial adherence and at resolving the paradox of an adhesive but dispensable pilus. Combining immunoblotting and electron microscopy analyses, we showed that the PilB fiber is essential for efficient PilA display on the surface of the capsulated strain NEM316. We then demonstrated that pilus integrity becomes critical for adherence to respiratory epithelial cells under flow-conditions mimicking an in vivo situation and revealing the limitations of the commonly used static adherence model. Interestingly, PilA exhibits a von Willebrand adhesion domain (VWA) found in many extracellular eucaryotic proteins. We show here that the VWA domain of PilA is essential for its adhesive function, demonstrating for the first time the functionality of a prokaryotic VWA homolog. Furthermore, the auto aggregative phenotype of NEM316 observed in standing liquid culture was strongly reduced in all three individual pilus mutants. S. agalactiae strain NEM316 was able to form biofilm in microtiter plate and, strikingly, the PilA and PilB mutants were strongly impaired in biofilm formation. Surprisingly, the VWA domain involved in adherence to epithelial cells was not required for biofilm formation