Optimal uptake kinetics: physiological acclimation explains the pattern of nitrate uptake by phytoplankton in the ocean

Phytoplankton supply the base of the marine food web and drive the biogeochemical cycles of carbon and nutrients. Over much of the ocean, their growth is limited by their uptake of nitrogen (as nitrate), which has most commonly been described by the hyperbolic Michaelis-Menten (MM) equation. However, the lack of a theory to explain variations in MM constants has hindered our ability to predict the response of marine ecosystems to changes in environmental conditions. The MM equation fits data from short-term experiments well, but does not agree with steady-state experiments over wide ranges of nutrient concentrations. In contrast, the recently developed optimal uptake kinetics (OU) does agree with the latter and can also describe the observed pattern of MM half-saturation constants from field. experiments. OU kinetics explains the observed pattern of N uptake as the result of a general physiological trade-off between nutrient uptake capacity and affinity. The existence of a general trade-off would imply a relatively high degree of predictability in the response of nutrient uptake to changing nutrient concentrations and thus provide a basis for predicting effects of climate change on marine ecosystems and biogeochemical cycles

An \u3cem\u3ein vitro\u3c/em\u3e Study on the Influence of Residual Sugars on Aerobic Changes in Grass Silages

How do residual sugars in high dry matter grass silages influence microbial metabolism? To answer this question a simple laboratory method was developed using pH as main indicator for aerobic changes

How important is diversity for capturing environmental-change responses in ecosystem models?

Marine ecosystem models used to investigate how global change affects ocean ecosystems and their functioning typically omit pelagic plankton diversity. Diversity, however, may affect functions such as primary production and their sensitivity to environmental changes. Here we use a global ocean ecosystem model that explicitly resolves phytoplankton diversity by defining subtypes within four phytoplankton functional types (PFTs). We investigate the model's ability to capture diversity effects on primary production under environmental change. An idealized scenario with a sudden reduction in vertical mixing causes diversity and primary-production changes that turn out to be largely independent of the number of coexisting phytoplankton subtypes. The way diversity is represented in the model provides a small number of niches with respect to nutrient use in accordance with the PFTs defined in the model. Increasing the number of phytoplankton subtypes increases the resolution within the niches. Diversity effects such as niche complementarity operate between, but not within PFTs, and are constrained by the variety of traits and trade-offs resolved in the model. The number and nature of the niches formulated in the model, for example via trade-offs or different PFTs, thus determines the diversity effects on ecosystem functioning captured in ocean ecosystem models

Rapid detection of the aspergillosis biomarker triacetylfusarinine C using interference-enhanced Raman spectroscopy

Triacetylfusarinine C (TAFC) is a siderophore produced by certain fungal species and might serve as a highly useful biomarker for the fast diagnosis of invasive aspergillosis. Due to its renal elimination, the biomarker is found in urine samples of patients suffering from Aspergillus infections. Accordingly, non-invasive diagnosis from this easily obtainable body fluid is possible. Within our contribution, we demonstrate how Raman microspectroscopy enables a sensitive and specific detection of TAFC. We characterized the TAFC iron complex and its iron-free form using conventional and interference-enhanced Raman spectroscopy (IERS) and compared the spectra with the related compound ferrioxamine B, which is produced by bacterial species. Even though IERS only offers a moderate enhancement of the Raman signal, the employment of respective substrates allowed lowering the detection limit to reach the clinically relevant range. The achieved limit of detection using IERS was 0.5 ng of TAFC, which is already well within the clinically relevant range. By using an extraction protocol, we were able to detect 1.4 μg/mL TAFC via IERS from urine within less than 3 h including sample preparation and data analysis. We could further show that TAFC and ferrioxamine B can be clearly distinguished by means of their Raman spectra even in very low concentrations. © 2020, The Author(s)

Revisiting the Local Scaling Hypothesis in Stably Stratified Atmospheric Boundary Layer Turbulence: an Integration of Field and Laboratory Measurements with Large-eddy Simulations

The `local scaling' hypothesis, first introduced by Nieuwstadt two decades ago, describes the turbulence structure of stable boundary layers in a very succinct way and is an integral part of numerous local closure-based numerical weather prediction models. However, the validity of this hypothesis under very stable conditions is a subject of on-going debate. In this work, we attempt to address this controversial issue by performing extensive analyses of turbulence data from several field campaigns, wind-tunnel experiments and large-eddy simulations. Wide range of stabilities, diverse field conditions and a comprehensive set of turbulence statistics make this study distinct

Turbulent flow at 190 m height above London during 2006-2008: A climatology and the applicability of similarity theory

Flow and turbulence above urban terrain is more complex than above rural terrain, due to the different momentum and heat transfer characteristics that are affected by the presence of buildings (e.g. pressure variations around buildings). The applicability of similarity theory (as developed over rural terrain) is tested using observations of flow from a sonic anemometer located at 190.3 m height in London, U.K. using about 6500 h of data. Turbulence statistics—dimensionless wind speed and temperature, standard deviations and correlation coefficients for momentum and heat transfer—were analysed in three ways. First, turbulence statistics were plotted as a function only of a local stability parameter z/Λ (where Λ is the local Obukhov length and z is the height above ground); the σ_i/u_* values (i = u, v, w) for neutral conditions are 2.3, 1.85 and 1.35 respectively, similar to canonical values. Second, analysis of urban mixed-layer formulations during daytime convective conditions over London was undertaken, showing that atmospheric turbulence at high altitude over large cities might not behave dissimilarly from that over rural terrain. Third, correlation coefficients for heat and momentum were analyzed with respect to local stability. The results give confidence in using the framework of local similarity for turbulence measured over London, and perhaps other cities. However, the following caveats for our data are worth noting: (i) the terrain is reasonably flat, (ii) building heights vary little over a large area, and (iii) the sensor height is above the mean roughness sublayer depth

Rebaling of silage and haylage and its effects on forage microbial and chemical composition - A pilot study

Use of big bale silage and haylage can be difficult on farms where daily forage consumption is comparatively low as speed of deterioration of forage after bale opening may be faster than feed-out rate. Production of smaller bales at harvest is possible, but expensive and work-intensive. Therefore, a pilot study of rebaling forage stored in big bales to smaller bales was conducted. Three separate experiments were included, where microbial and chemical composition of silage and haylage was studied before and after rebaling. In Experiment III, residual big bale forage stored and opened together with rebaled forage was included. Results showed that rebaled haylage and silage had higher yeast counts compared to initial forage; however, residual bales in Experiment III had yeast counts similar to rebaled forage, indicating an effect of storage time rather than of rebaling. In Experiment II, mould counts were higher in rebaled compared to initial silage, but not in haylage. Chemical composition was similar in initial and rebaled forage except for ammonia-N. In Experiment III, ammonia-N was higher in rebaled compared to initial and residual forage and was the only chemical variable affected by rebaling. Bale temperature during aerobic storage followed ambient temperature until day 6-8 in Experiment I and until day 14 in Experiment III where ambient temperature was lower. In conclusion, rebaling can be done without large changes in chemical composition of the forage, but yeast and mould counts may be higher in rebaled forage, and this risk should be considered when using this procedure

Glandular trichomes on the leaves of Rosmarinus officinalis: Morphology, stereology and histochemistry

Stereological and histochernical analyses of the glandular trichomes on leaves of Rosmarinus officinalis were carried out using light and fluorescence microscopy. Non-glandular and two types of glandular trichomes - peltate and capitate - are described. The stereological method was used for estimating the volume density of epidermis, mesophyll, mechanical tissue, central cylinder, intercellular spaces and volume density of different types of glandular trichomes. The results showed that the volume density of adaxial epidermis was higher than abaxial epidermis. The volume density of peltate trichomes was higher than the volume density of capitate ones. The values obtained for number of peltate and capitate trichomes showed that the capitate trichomes type I were more numerous. The histochernical tests showed positive reactions to proteins and polysaccharides for both types of trichomes, while the phenolic substances were found only in peltate trichomes

Water column biogeochemistry of oxygen minimum zones in the eastern tropical North Atlantic and eastern tropical South Pacific Oceans

Recent modeling results suggest that oceanic oxygen levels will decrease significantly over the next decades to centuries in response to climate change and altered ocean circulation. Hence the future ocean may experience major shifts in nutrient cycling triggered by the expansion and intensification of tropical oxygen minimum zones (OMZs). There are numerous feedbacks between oxygen concentrations, nutrient cycling and biological productivity; however, existing knowledge is insufficient to understand physical, chemical and biological interactions in order to adequately assess past and potential future changes. We investigated the pelagic biogeochemistry of OMZs in the eastern tropical North Atlantic and eastern tropical South Pacific during a series of cruise expeditions and mesocosm studies. The following summarizes the current state of research on the influence of low environmental oxygen conditions on marine biota, viruses, organic matter formation and remineralization with a particular focus on the nitrogen cycle in OMZ regions. The impact of sulfidic events on water column biogeochemistry, originating from a specific microbial community capable of highly efficient carbon fixation, nitrogen turnover and N2O production is further discussed. Based on our findings, an important role of sinking particulate organic matter in controlling the nutrient stochiometry of the water column is suggested. These particles can enhance degradation processes in OMZ waters by acting as microniches, with sharp gradients enabling different processes to happen in close vicinity, thus altering the interpretation of oxic and anoxic environments