A collaborative tool for mobilizing knowledge in agrobiodiversity and the interface with climate change: the Platform for Agrobiodiversity Research

Poster presented at 2nd ANAFE International Symposium. Lilongwe (Malawi), Jul 200

Low-energy excitations of a linearly Jahn-Teller coupled orbital quintet

The low-energy spectra of the single-mode h x (G+H) linear Jahn-Teller model is studied by means of exact diagonalization. Both eigenenergies and photoemission spectral intensities are computed. These spectra are useful to understand the vibronic dynamics of icosahedral clusters with partly filled orbital quintet molecular shells, for example C60 positive ions.Comment: 14 pages revte

Algebraic-matrix calculation of vibrational levels of triatomic molecules

We introduce an accurate and efficient algebraic technique for the computation of the vibrational spectra of triatomic molecules, of both linear and bent equilibrium geometry. The full three-dimensional potential energy surface (PES), which can be based on entirely {\it ab initio} data, is parameterized as a product Morse-cosine expansion, expressed in bond-angle internal coordinates, and includes explicit interactions among the local modes. We describe the stretching degrees of freedom in the framework of a Morse-type expansion on a suitable algebraic basis, which provides exact analytical expressions for the elements of a sparse Hamiltonian matrix. Likewise, we use a cosine power expansion on a spherical harmonics basis for the bending degree of freedom. The resulting matrix representation in the product space is very sparse and vibrational levels and eigenfunctions can be obtained by efficient diagonalization techniques. We apply this method to carbonyl sulfide OCS, hydrogen cyanide HCN, water H$_2$O, and nitrogen dioxide NO$_2$. When we base our calculations on high-quality PESs tuned to the experimental data, the computed spectra are in very good agreement with the observed band origins.Comment: 11 pages, 2 figures, containg additional supporting information in epaps.ps (results in tables, which are useful but not too important for the paper

Seeking an alliance between farmers and genebanks

In Bolivia and Malaysia, farmers are increasingly affected by drought, water logging and unpredictable weather patterns. To cope, they plant an array of traditional crops and varieties to spread the risk of crop loss, whether from pests, diseases or the weather. However for these farmers, agrobiodiversity is not just a way to insure against crop losses; it's an important source of cultural pride and value. Seventy three year old Don Victor, who farms at 4,100 metres above sea level in Colomi, Bolivia, maintains 39 varieties of native potato. ”These are like my family,” he says, sharing his planting material only with those he trusts

Application of multichannel Wiener filters to the suppression of ambient seismic noise in passive seismic arrays

We are concerned with the detection and location of small seismic events, such as can be encountered in monitoring hydro-fracturing with surface sensors. Ambient seismic noise is the main problem in detection of weak seismic phases from these events, particularly as the sites of interest are often within or near producing fields. Band-pass filtering and stacking are the most widely used techniques for enhancing the signal-to-noise ratio (SNR) in passive seismic experiments, but they are of limited value when noise and signal share the same frequency band. Seismic arrays can be used to reduce the unwanted noise (e.g., traffic noise, pumping noise, scattering ground roll) by delay-and-sum techniques (also called beamforming) or by frequencywavenumber filtering. Beamforming maximizes the array response for the assumed direction and slowness of the signal. Whereas in some situations it can be highly effective, and the azimuth and slowness of the signal can be determined by a grid search approach, it is vulnerable to contamination by side-lobe energy, particularly for broadband signals and noise (Rost and Thomas, 2002). Frequencywavenumber filtering can be very effective but requires regularly spaced arrays and implicitly assumes plane-wave propagation. Both methods perform poorly when the waveform changes significantly between stations of the array, as might be caused, for example, by differences in site response. In this article, we present a multichannel Wiener filtering technique, which allows the removal of coherent noise from three-component 2D arrays without making a priori assumptions about the mode of propagation (e.g., no planewave assumption is required for the noise field). We test the effectiveness of this filter with two case studies. In the first case, we add synthetic signals of varying strengths to actual noise data recorded with a hexagonal array during hydrofracturing within a producing oil field in Wyoming, USA. Using this test, we are able to provide estimates of the smallest event detectable with the filtered data, and compare the results with conventional techniques, such as stacking. The second test case is a dense, small-aperture 2D seismic array of 95 stations placed within an area of 130 m 56 m on a landslide deposit in the Northern Apennines, Italy. Numerous microearthquakes have been recorded with this array, whose faint P-phases serve as an ideal data set for testing filtering techniques. Using the two case studies, we discuss the effectiveness of the multichannel Wiener filter on SNR improvement, and show that including horizontal components into the analysis increases the SNR improvement more than using only vertical components

Issues in Choosing the References to Use for Spectral Ratios from Observations and Modeling at Cavola Landslide in Northern Italy

A reference site has to be free of amplification or de-amplification effects, namely with no troughs and peaks in its Fourier amplitude spectrum. At the Cavola landslide we show that this spectrum is dependent on the direction of propagation of wave fronts for incidence angles in the range 30° to 90°. Our study is based on comparison of spectral ratios from observations and 2D numerical simulations. We have modeled propagation in a 2D profile for SH and SV waves with several incidence angles in the 0° ±90° range, where 0° and 90° are respectively vertical and horizontal incidence, except that ±90° denotes Rayleigh waves in the P-SV. We discuss in detail the result for angles of incidence of 0, ±20°, ±60°, ±90°. We have obtained observed horizontal-to-horizontal earthquakes spectral ratios using three reference sites. Two of these have matching receivers in the model, located at the opposite ends of the 2D profile. Overall observations are matched best when the reference site is located on the same side of the landslide as the incoming wave front. We also find general agreement of the observed H/H spectral ratios from earthquakes with H/V and H/H spectral ratios from noise, and the match between H/V values from noise and synthetic spectral ratios using an absolute, flat half-space reference is very good. On the other hand, 1D modeling performs poorly in comparison with 2D modeling in our case, for which the shape ratio h/D = 0.2 is intermediate between primarily-1D and strongly-2D wave propagation according to the classification of Bard and Bouchon (1985)

JCV-specific T-cells producing IFN-gamma are differently associated with PmL occurrence in HIV patients and liver transplant recipients

Aim of this work was to investigate a possible correlation between the frequency of JCV-specific T-cells and PML occurrence in HIV-infected subjects and in liver transplant recipients. A significant decrease of JCV-specific T-cells was observed in HIV-PML subjects, highlighting a close relation between JCV-specific T-cell immune impairment and PML occurrence in HIV-subjects. Interestingly, liver-transplant recipients (LTR) showed a low frequency of JCV-specific T-cells, similar to HIV-PML subjects. Nevertheless, none of the enrolled LTR developed PML, suggesting the existence of different immunological mechanisms involved in the maintenance of a protective immune response in LT