1,432 research outputs found
Hereditary Sensory Neuropathy Type I secondary to SPTLC1/2 mutations: pathogenesis to treatment
Hereditary Sensory Neuropathy Type I (HSN1) secondary to SPTLC1/2 mutations is a rare, slowly progressive sensory-motor neuropathy, leading to profound sensory loss and variable, but often severe, motor deficits. The genes SPTLC1/2 encode for Serine Palmitoyltransferase, an essential enzyme in de-novo sphingolipid biosynthesis. SPTLC1/2 mutations alter its substrate specificity, leading to the synthesis and accumulation of atypical metabolites, 1-deoxysphinigolipids (1-deoxySLs). 1-DeoxySLs have been postulated to be neurotoxic however the underlying pathomechanism has not been elucidated. L-serine oral supplementation is a potential therapeutic candidate but the lack of responsive outcome measures is an obstacle in carrying out a definitive clinical trial. The first objective of this thesis was to determine if 1-deoxySLs are neurotoxic and to investigate the mechanism of their toxicity using two in-vitro neuronal models: 1) mouse primary motor and DRG neurons and 2) human iPSC derived sensory neurons. The second objective was to identify a responsive outcome measure by carrying out a natural history study. 1-deoxySL treatment resulted in dose dependent neurotoxicity in both in-vitro models. Findings in the mouse in-vitro model suggest mitochondrial and ER dysfunction as possible mediators of 1-deoxySL toxicity. Probing further into ER dysfunction using SH-SY5Y cells suggests 1-deoxySLs cause early ER stress leading to the activation of the unfolded protein response. In the HSN1 iPSC derived sensory neurons there was increased production of 1-deoxySLs and early cell loss but no functional or structural ER and mitochondrial defects in these neurons at 5 months. Assessments used in the natural history study included CMT Neuropathy score version 2, nerve conduction studies, quantitative sensory testing, computerised myometry, intra-epidermal nerve fibre density (thigh), MRI determined calf intramuscular fat accumulation, plasma 1-deoxySLs and patient based questionnaires. MRI determined calf muscle fat fraction showed validity and high responsiveness over 12 months and will be useful in HSN1 clinical trials
Deep mutational scanning to understand the evolution of SARS-CoV-2 spike.
SARS-CoV-2 emerged as a zoonosis in 2019, causing a pandemic that led to significant global mortality, and devastating economic impact. SARS-CoV-2’s pathogenicity was related to its novelty in an immunologically naïve population. With increasing population immunity through vaccination and/or natural infection attenuating the disease, societies have been able to return to a semblance of normality, however SARS-CoV-2 has persisted to become endemic. With endemicity SARS-CoV-2 has continued to adapt and evolve, initially to optimise transmission and latterly to escape immune responses. To predict the future evolution, a deep mutagenesis scanning platform was developed. Deep mutagenesis scanning allows the phenotypic effects of thousands of mutations to be explored in a high-throughput manner. Using whole trimeric Alpha spike displayed on mammalian cells provided a physiologically relevant model and allowed the identification of mutations that increase ACE2 binding (the receptor for SARS-CoV-2 spike) and immune escape, which subsequently appeared in the Omicron lineages. Using this novel deep mutagenesis platform, the evolutionary trajectory of the SARS-CoV-2 receptor-binding domain can be seen to be restricted by epistasis. Vaccine induced immune responses against the receptor binding-domain are found to be remarkably focused on one or two residues despite being polyclonal and these residues have been repeatedly selected for in a variety of variants. From work exploring the antigenic effects of receptor-binding domain mutations, it becomes apparent the N-terminal domain contributes significantly to the immune escape seen with Delta and BA.1. This effect of the N-terminal domain does not appear to be mediated by escape from N-terminal domain directed antibodies, but by making the receptor-binding domain more difficult to neutralise. The plasticity of and focused immune response on the receptor-binding domain make further SARS-CoV-2 antigenic drift inevitable. Work described here suggests the most dramatic changes in antigenicity requires changes in both the N-terminal domain and receptor-binding domain.Open Acces
Low-Power Mixed-Signal ASIC for Cryogenic SiPM Readout
L'abstract è presente nell'allegato / the abstract is in the attachmen
A low-power mixed-signal ASIC for SiPM readout at low temperature
A mixed-signal ASIC developed to readout silicon photomultipliers (SiPM) at low temperature is presented. The chip is designed in a 110 nm CMOS technology. Both sin- gle photon counting and Time-over-Threshold (ToT) operating modes are supported. The ToT modality is useful when many photons pile-up to yield a continuous signal. In single photon counting mode an event rate of up to 5 MHz per channel can be accommodated. The time resolution is 50 ps and the target power consumption is less tha 5 mW per channel. The architecture of a first 32-channel prototype is described. Dedicated test structures to qualify critical building blocks at cryogenic temperature have also been deployed
Influence of Perceived Stressful Homework on Lifestyle Habits and Subsequently on Adiposity : a QUALITY Study
Contexte : Les devoirs perçus stressants semblent avoir un effet négatif sur l’adiposité des enfants entre 8-10 ans et l’activité physique d’intensité moyenne-élevée (APMV) et le temps-écran sont des médiateurs dans cette relation.
Objectifs : 1) Examiner si un facteur nutritionnel pourrait aussi être un médiateur, 2) Étudier les associations et médiateurs présents à l’âge de 10-12 ans, et 3) Prendre une approche longitudinale sur ces résultats pour étudier ces relations.
Méthodes : Les données suivantes de l’étude de QUALITY ont été extraites : durée des devoirs, niveau de stresse et temps-écran, durée de sommeil et APMV, facteurs nutritionnels, et profil d’adiposité. « Process Macro » a été utilisé pour faire les analyses statistiques.
Résultats principaux : Les devoirs perçus étant stressants étaient positivement associés avec l’adiposité seulement à 8-10 ans chez les enfants, particulièrement les filles. La consommation de breuvage sucré était un médiateur partiel entre les devoirs perçus étant stressants et le pourcentage de gras abdominal des enfants de 8-10 ans. À 10-12 ans, le temps-écran était le seul médiateur entre les devoirs et l’index de masse corporelle. Le changement dans la durée de sommeil était le seul médiateur entre les changements de devoirs perçus étant stressant et pourcentage de gras abdominal qui s’est produit depuis l’âge de 8-10 ans chez les enfants, particulièrement les filles.
Conclusions : Avec l’avancée de l’âge et augmentation des devoirs, les habitudes d’écran changent. Dans l’aspect préventif de l’obésité pédiatrique, le temps-écran et la durée de sommeil pourraient être surveillés de près.Background: Perceived stressful homework was shown to be associated with poor adiposity profile in children aged 8-10 years old, and this was mediated by a decrease in moderate-to-vigorous physical activity (MVPA) and an increase in screen time.
Objectives: 1) Explore if any dietary factors could be potential mediator, 2) Observe the associations and mediators present at 10-12 years of age, and 3) Examine from a longitudinal perspective these associations (from 8-10 years old to 10-12 years old).
Methods: The following information on the QUALITY cohort children were extracted: homework duration, stress level and screen time, sleep and MVPA duration, dietary factors, and adiposity profile. Process Macro for SPSS was used for the statistical analysis.
Main Results: Perceived stressful homework was positively associated with adiposity at 8-10 years old only in all children, particularly in girls. High-sugar drink was a partial mediator between perceived stressful homework and trunk fat percentage in children at 8-10 years old. Screen time mediated the relationship between homework and body mass index of children at 10-12 years old. Sleep duration change mediated the association between perceived stressful homework duration and trunk fat percentage changes in children since ages 8-10 years old, especially in girls.
Discussion: As children grow and perform a lot of homework, screen habits changes. In prevention aspect of paediatric obesity, screen time and sleep duration are the two major habits to monitor
Multiclass Alignment of Confidence and Certainty for Network Calibration
Deep neural networks (DNNs) have made great strides in pushing the
state-of-the-art in several challenging domains. Recent studies reveal that
they are prone to making overconfident predictions. This greatly reduces the
overall trust in model predictions, especially in safety-critical applications.
Early work in improving model calibration employs post-processing techniques
which rely on limited parameters and require a hold-out set. Some recent
train-time calibration methods, which involve all model parameters, can
outperform the postprocessing methods. To this end, we propose a new train-time
calibration method, which features a simple, plug-and-play auxiliary loss known
as multi-class alignment of predictive mean confidence and predictive certainty
(MACC). It is based on the observation that a model miscalibration is directly
related to its predictive certainty, so a higher gap between the mean
confidence and certainty amounts to a poor calibration both for in-distribution
and out-of-distribution predictions. Armed with this insight, our proposed loss
explicitly encourages a confident (or underconfident) model to also provide a
low (or high) spread in the presoftmax distribution. Extensive experiments on
ten challenging datasets, covering in-domain, out-domain, non-visual
recognition and medical image classification scenarios, show that our method
achieves state-of-the-art calibration performance for both in-domain and
out-domain predictions. Our code and models will be publicly released.Comment: Accepted at GCPR 202
Simulations of CMOS pixel sensors with a small collection electrode, improved for a faster charge collection and increased radiation tolerance
CMOS pixel sensors with a small collection electrode combine the advantages
of a small sensor capacitance with the advantages of a fully monolithic design.
The small sensor capacitance results in a large ratio of signal-to-noise and a
low analogue power consumption, while the monolithic design reduces the
material budget, cost and production effort. However, the low electric field in
the pixel corners of such sensors results in an increased charge collection
time, that makes a fully efficient operation after irradiation and a timing
resolution in the order of nanoseconds challenging for pixel sizes larger than
approximately forty micrometers. This paper presents the development of
concepts of CMOS sensors with a small collection electrode to overcome these
limitations, using three-dimensional Technology Computer Aided Design
simulations. The studied design uses a 0.18 micrometer process implemented on a
high-resistivity epitaxial layer.Comment: Proceedings of the PIXEL 2018 Worksho
Exploring the Disproportionate Impact of COVID-19 in Older Adults in Canada
Background – Why are older Adults are Higher Risk?
The majority of older adults have comorbid conditions, which are associated with a higher risk for COVID-19.
Many live in residential care homes, which have seen the highest number of covid-19 cases due to tightly shared living spaces.
With weakened immune systems, older adults living in poverty face additional challenges in protecting themselves from the virus, as it is difficult for them to comply with public health measures such as social distancing.
5% of individuals in the lowest income quartile were hospitalized due to covid19, compared to only 11.4% of individuals from the highest income quartile.
Methods – The data was retrieved from the Canadian MIS Database (CMDB) and the discharge abstract database (DAD). The CMDB contains financial and statistical operations information on public hospitals and regional health authorities across Canada. Case selection is based on COVID-19 diagnosis codes available in the International Statistical Classification of Diseases and Related Health Problems.
Results – Elderly faced higher rates of hospitalization during the pandemic. The average length of hospital stay was also higher for older adults—hospitalizations of individuals under age 65 without comorbidity 41,707 with comorbidity 12,372. Hospitalizations of individuals 65 and older without comorbidity were 22,221 with comorbidity 24,731. Higher Hospitalization rates and issues of inequality in the healthcare system globally. As the pandemic progressed, hospitalization increased in number significantly. The average length of stay for individuals younger than age 65 without comorbidity is 7.7 days compared to 17.0 days in patients with comorbidity. The average full length of stay for individuals 65 and older without comorbidity was 13.2 days, While in patients with comorbidity 19.2 days. Older adults had higher in-facility death rates due to COVID-19 hospitalization. The in-facility death rate of individuals younger than 65 without comorbidity is 2.5%, With comorbidity at 12.9%. In-facility death rate of individuals 65 and older without comorbidity is 14.4%, with comorbidity at 23.2%.
Conclusion – By analyzing and comparing various hospitalization rates for Canada, the precise data indicate that older adults have been disproportionatelyimpacted by COVID-19. It is now important to determine the underlying structural issues that have caused this inequality to prioritize healthy aging.
 
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Revisiting the Ethical Framework Governing Water Fluoridation and Food Fortification
Introduction
Nutrition is one of the most important aspects of preventative health, and interventions such as food fortification and water fluoridation have been implemented widely to ensure that populations are meeting key micronutrient recommendations. Food fortification is the idea of adding any one of a wide variety of micronutrients to staple foods to ensure that populations are meeting their micronutrient needs. Food fortification started with the addition of iodine to salt after discovering the relationship between iodine deficiency and goiter [1]. Other nutrients such as folate for the prevention of spinal bifida in newborns and vitamin D to prevent cancers, neurological, and cardiovascular diseases were later delivered to the public en masse via food fortification [2, 3].
Bioethics in healthcare typically governs the interaction and decision making between healthcare professionals and their patients. However, food fortification and water fluoridation seem out of scope compared to typical approaches, since there is no direct patient-clinician interaction and these interventions are delivered en masse to populations rather than individuals [3]. Because of this, views on informed consent, deception, beneficence, and non-maleficence need to be adjusted for context.
Recent papers have looked at the feasibility of adding statins (drugs which inhibit the production of cholesterol in order to prevent heart disease [4]) to public water supplies. Ginter et al. strongly suggested that statins should not be added to public water supplies as they will most likely cause detrimental health effects to those not suffering from high cholesterol or heart disease [5]. By contrast, the landmark JUPITER Trial (Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin) found that statins administered to patients with normal or low cholesterol levels effectively reduced their chance of first heart attack or stroke [6]. Outside of statins, leading bioethicist Julian Savulescu has argued that drugs for cognitive enhancement can be added to our water and food supplies [7]. Both propositions, directly cite food fortification and water fluoridation programs as their predecessors, suggesting that adding statins and cognitive enhancers to water would be the “logical next step”.
These propositions on statins or cognitive enhancement build upon the unstated premise that water fluoridation and food fortification are ethical. However, this assumption must be revisited by reviewing the ethical frameworks that justify food fortification and water fluoridation programs. In this paper, we will consider whether the similarities between food fortification and water fluoridation override their differences and thus what ethical conclusions can be cross-pollinated between the two interventions. From there, we will analyze the ethical frameworks that both support and reject such public health interventions. Specifically, this paper will discuss the “known knowns” and the “known unknowns” concerning the ethics around water fluoridation and food fortification.
“Known Knowns” – Science of Water Fluoridation and Food Fortification
Food fortification can be generally defined as the practice of increasing the content of an essential micronutrient in a food with the aim of improving the nutritional quality of the food supply and provide a public health benefit with minimal risk to individual health [8]. Unlike the somewhat simplistic process of adding sodium fluoride or fluorosilicate derivatives to public water supplies, food fortification encompasses the addition of a broad range of nutrients to various foods. A few prominent examples of such nutrient interventions include folate being added to flour, iodine being added to salt, and the fortification of vitamin D in milk. Folate consumption was demonstrated to effectively prevent neural tube defects in unborn infants [9], iodine deficiency was demonstrated to cause goiter and hypothyroidism [10], while hypovitaminosis D was shown to cause osteoporosis amongst a vast range of other illnesses [11]. The diseases prevented by food fortification and water fluoridation should be taken into account when considering the necessity of these public health interventions.
On the other hand, water fluoridation is the practice of adding fluoride chemicals (sodium fluoride or fluorosilicate derivatives) to public water supplies for the purpose of preventing tooth decay and cavities [12–14]. Public Water fluoridation first began in 1951 while food fortification began in 1992 with the addition of iodine, vitamin A, and iron [2, 15]. Scientific evidence shows that water fluoridation prevents tooth decay by providing individuals with frequent and consistent contact with low levels of fluoride [16]. Public water fluoridation programs have been shown to reduce tooth decay by 25% in children and adults [17–20]. The introduction of fluoride also prevents other oral health complications such as gum pain, gum disease, and oral abscesses [21].
A key difference between water fluoridation and food fortification is the policies regulating when and how these interventions are to take place. In the public health context, we shall assume that fluoride is added solely to water (we will consider alternatives later). Water is unique in that it has other purposes for humans aside from consumption, such as for cleaning the body. For instance, in the United Kingdom, water is not considered food until it emerges from the taps [22]. This loophole allows the addition of fluoride to water supplies early on in the processing stages to be exempt from the regulations for food fortification despite the obvious intent that the fluoride added to the water is meant for human consumption [22].
When considering the fortification of milk, salt and flour, only milk can be considered a food product in all its respective stages (from raw milk through to its final bottled form). Flour is almost never consumed raw and its raw consumption as dough is strongly advised against by the Food and Drug Administration due to risk of infection [23]. Likewise, salt is almost never consumed in its pure form and instead is used as an additive to other dishes. In that sense, should folic acid addition to flour or iodization of salt be declassified as food fortification since they are not food in the most technical sense? Taking such a view is disingenuous (as is the British water loophole) as it ignores the intent of adding nutrients to food precursors: so that they may be consumed in their final stages of processing (with food, the cooked dish). Through this view, nutrients are added to the products with the intent of consumption. This intent should be the basis of ethical consideration, not the stage of nutrient delivery.
“Known Unknowns” – Ethical Analysis of Water Fluoridation and Food Fortification
To begin an ethical analysis of food fortification and water fluoridation, a thorough review of the similarities between the two processes brings several ethical questions/dilemmas to the fore. The key similarities between food fortification and water fluoridation can essentially be summarized in three general areas: intent, delivery, and consent (that is, the lack thereof).
1. Intent
From the outset, both water fluoridation and food fortification have similar medical intents: to alleviate nutritional deficiencies and their resulting complications in the general public. In this sense, both water fluoridation and food fortification are prophylactic, intended to prevent disease as opposed to treating an already existing ailment. The principles of beneficence and stewardship (the duty of public health authorities to act for the welfare of persons and the population, especially vulnerable populations) support the argument that governments have a duty to actively protect and promote the health and well-being of the population. One can argue that governments have access to an easy to use, safe, efficient and cost-effective means of reducing medical complications with water fluoridation and food fortification, and thus are effectively protecting the health of the populations. A question arises from the principle of beneficence regarding whether good intent can be applied to a broader range of drugs and diseases. Such propositions of adding medications to water supplies are not farfetched as there have already been debates regarding the addition of cholesterol-reducing statins to public water supplies [24]. These propositions, especially the one by Savulescu, build on the methods from food fortification and water fluoridation but shift the impetus from disease prevention to enhancement, posing new ethical challenges.
2. Delivery
The modes of delivery for both water fluoridation and food fortification are highly similar. They involve the modification of products that are staple foods, and are therefore commonly ingested. The way fluoride is delivered makes consuming fluoridated water or micronutrient-fortified foods unlike taking fluoride or micronutrient supplements, in that consumption of the supplements implies the intent of the consumer to alleviate or prevent a particular micronutrient deficiency. However, consuming fluoridated water or folate-fortified flour products does not necessarily come with this same definite intent of disease prevention on the end of the consumer. Equally, due to cost or unavailable alternatives, it may be difficult for individuals who do not wish to consume fortified foods or fluoridated water to purchase salt, flour, milk or water that do not contain these additives.
In addition to this, the consumption of fortified foods and fluoridated water are personal and do not require the direct supervision or administration of a physician or other healthcare professional. This is contrary to vaccinations (another prophylactic public health intervention) which are delivered by a healthcare provider. This also poses additional ethical questions, namely those of whether beneficence supersedes consent and whether interventions that are intended to treat populations en masse need to follow the same guidelines that govern typical medical practice.
3. Consent
The similarity in the consent procedure behind food fortification and water fluoridation is the most important area for ethical analysis. Since a healthcare provider is not administering or prescribing fluoridated water or fortified food products, there is no room for an informed express consent procedure. What makes food fortification and water fluoridation more similar to one another and different from vaccinations and nutrient supplements is the fact that there is an implicit deception involved with the passive delivery of nutrients through food and water. That is, when an individual is consuming a fortified food or drinking fluoridated water, the sole and primary purpose of that act of consumption is not necessarily to replenish the nutrient which the food or water is fortified with. The passive consumption of nutrients is in fact the hallmark of these interventions as they do not require any lifestyle change to gain the benefits of consuming the nutrient. This, it can be argued, constitutes an infringement of individuals’ autonomy and their interest in self-determination.
Ethical Frameworks
Despite the different delivery mechanisms and ailments treated by food fortification and water fluoridation, the similarities regarding intent, passive delivery, and the lack of an informed consent procedure render the two types of public health interventions ethically similar. The corresponding ethical dilemmas and questions regarding intent, passive delivery and the lack of an informed consent necessitate a thorough analysis of the ethical frameworks used to evaluate food fortification and water fluoridation.
Two examples of ethical frameworks used to evaluate public health interventions are the justificatory approach of James Childress and the stewardship model of the Nuffield Council on Bioethics. The justificatory approach consists of the following tenets: effectiveness, proportionality, necessity, least infringement and public justification [25]. The stewardship model considers these principles: reduce the risk of ill health, address the health of children, reduce health inequalities, not intervene without the consent of those affected, minimize the interventions that affect important areas of personal life and not coerce ordinary adults to lead healthy lives [26]. Mark Lawrence applies the justificatory approach for all his food fortification case studies as does Niyi Awofeso to water fluoridation [27, 28]. Jiang et al. and the Nuffield Council of Bioethics use the stewardship model in their evaluation of water fluoridation in New Zealand and the United Kingdom respectively [22, 29].
Table 1 concisely displays how the tenets of both the justificatory approach and stewardship models overlap and agree. Nonetheless, differences between the frameworks should not be overlooked, particularly the fact that the stewardship model places a particular interest in the health of children and focuses on health inequalities in the population. Despite these differences, ethical analyses of food fortification and water fluoridation shows that similar, even identical frameworks lead to opposite ethical judgements. A distinct example of this is the consideration of coercion by Jiang et al. and Lawrence. Jiang et al. argue that water fluoridation is inherently not coercive as it does not require any lifestyle change [29], while Lawrence claims that mandatory folic acid fortification of flour is coercive as it indiscriminately raises folate levels for everyone [27]. This differing definition of the term “coercion”, shows that even within ethical frameworks, having a provision to minimize coercion is not sufficient without an agreed-upon definition of the term. The coercion argument against public water fluoridation is further supported by the availability and near universal, non-coercive use of fluoridated toothpaste. In addition, evidence within the past decade has shown that low chronic daily intake of fluoride is a health risk associated with dental fluorosis and unhealthy fluoride accumulation levels within the body [30].
The passive consumption and the implied deception associated with water fluoridation and food fortification is overlooked by both the justificatory approach and stewardship model. Where this definition of deception directly relates to the ethics of food fortification and water fluoridation is in the fact that consumers are not necessarily fully aware of the entirety of their foods’ composition. While the FDA in the United States does have labeling requirements for fortified foods and salt [31] and also recommends that individuals in a community should know about fluoride levels in their water [32], this does not necessarily override the claim of deception being present in these interventions. With fortified foods, the final consumer of the food is not necessarily the purchaser of the ingredients which the food is made with (as in the case of eating food prepared by someone else). In addition, the knowledge of additional nutrients in the ingredients is further dispersed from the final consumer, perpetuating the deception of fortified foods.
Douglas Cross and Robert Carton take a more linear view on fluoridation [33]. Their argument starts with the fact that the Nuremberg Code (and all successive ethics codes derived from it) prescribes: “research and routine medical procedures must be done with the voluntary cooperation of the subjects, who must be fully informed of the risks and benefits of the medical procedures in which they are involved”. From this, Cross and Carton establish that fluoride is a medicine according to definitions from European and American pharmaceutical codes (generally defining medical substances as products used for treating or preventing disease in humans or animals) and point out that fluoride is not governed by the Nuremberg Code, rendering it unethical. This argument does tap into the problem of deception in water fluoridation, as passive consumption prevents the consumer from being “fully informed of the [procedure’s] risks and benefits”. Furthermore, this argument is easily transferrable to food fortification as adding nutrients to food does exhibit the qualities of a medicinal substance: nutrients such as folate and iodine have a preventive role in human illness (folate and iodine prevent neural tube defects and goiter respectively), and also do not fully adhere to the principle of informed consent.
Conclusions
Food fortification and water fluoridation interventions are very similar in that they do not involve a direct clinician-patient interaction and rely on the “patient’s” lack of knowledge and passive consumption of the target nutrient. The justificatory approach and the stewardship models both support from an ethical standpoint the processes of water fluoridation and food fortification. Nevertheless, both ethical frameworks display shortfalls after careful analysis and considerations of other opinions critical of food fortification and water fluoridation. In light of recent public discourse surrounding the delivery of therapeutics to the public through passive consumption, it is important that we revisit and continue to analyze the ethical frameworks that govern the already widely accepted interventions of food fortification and water fluoridation.
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26. Nu
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