Dye laser remote sensing of marine plankton

Dye laser, emitting four wavelengths sequentially in time, has been incorporated into helicopter-borne lidar flight package, for performing studies of laser-induced fluorescence of chlorophyll A in algae. Data obtained by multicolor lidar technique can provide water-resource management with rapid-access wide-area coverage of the impact of various environmental factors for any body of water

Visible absorbance spectra: A basis for in situ and passive remote sensing of phytoplankton concentration and community composition

The concentration and composition of phytoplankton populations are measured by an optical method which can be used either in situ or remotely. This method is based upon the in vivo light absorption characteristics of phytoplankton. To provide a data base for testing assumptions relative to the proposed method, visible absorbance spectra of pure cultures of 20 marine phytoplankton were obtained under laboratory conditions. Descriptive and analytical statistics were computed for the absorbance spectra and were used to make comparisons between members of major taxonomic groups and between groups. Spectral variation between the members of the major taxonomic groups was observed to be considerably less than the spectral variation between these groups. In several cases the differences between the mean absorbance spectra of major taxonomic groups are significant enough to be detected with passive remote sensing techniques

Laboratory tank studies of a single species of phytoplankton using a remote sensing fluorosensor

Phytoplankton were grown in the laboratory for the purpose of testing a remote fluorosensor. The fluorosensor uses a unique four-wavelength dye laser system to excite phytoplankton bearing chlorophyll and to measure the chlorophyll fluorescence generated by this excitation. Six different species were tested, one at a time, and each was grown two to four times. Fluorescence measured by the fluorosensor provides good quantitative measurement of chlorophyll concentrations for all species tested while the cultures were in log phase growth. Fluorescene cross section ratios obtained in the single species tank tests support the hypothesis that the shape of the fluorescence cross section curve remains constant with the species (differences in fluorescence cross section ratios are a basis for determining composition of phytoplankton according to color group when a multiwavelength source of excitation is used. Linear relationships exist between extracted chlorophyll concentration and fluorescence measured by the remote fluorosensor during the log phase growth of phytoplankton cultures tested

Analysis of ALOPE data from Superflux

Remote sensing data collected with the airborne lidar oceanographic probing experiment (ALOPE) laser fluorosensor during the Superflux 1 and Superflux 2 experiments were analyzed using two techniques. A qualitative technique which requires no supplementary data provided a near-real-time estimate of relative abundance of the golden-brown and green phytoplankton color groups. Contour plots developed for the later mission are used to demonstrate the utility of this technique. A quantitative technique which requires supplementary data to define the attenuation coefficient provides chlorophyll a concentration by color group. The sum of the golden-brown and green chlorophyll a data yields total chlorophyll a values which may be compared with in situ data. As expected, the golden-brown population was dominant in the Chesapeake Bay and the Bay plume whereas the green population was dominant in shelf waters

Mid-Infrared Spectral Diagnostics of Nuclear and Extra-Nuclear Regions in Nearby Galaxies

Mid-infrared diagnostics are presented for a large portion of the Spitzer Infrared Nearby Galaxies Survey (SINGS) sample plus archival data from the Infrared Space Observatory and the Spitzer Space Telescope. Our main result is that these mid-infrared diagnostics effectively constrain a target's dominant power source. The combination of a high ionization line index and PAH strength serves as an efficient discriminant between AGN and star-forming nuclei, confirming progress made with ISO spectroscopy on starbursting and ultraluminous infrared galaxies. The sensitivity of Spitzer allows us to probe fainter nuclei and star-forming regions within galaxy disks. We find that both star-forming nuclei and extranuclear regions stand apart from nuclei that are powered by Seyfert or LINER activity. In fact, we identify areas within four diagnostic diagrams containing >90% Seyfert/LINER nuclei or >90% HII regions/HII nuclei. We also find that, compared to starbursting nuclei, extranuclear regions typically separate even further from AGN, especially for low-metallicity extranuclear environments. In addition, instead of the traditional mid-infrared approach to differentiating between AGN and star-forming sources that utilizes relatively weak high-ionization lines, we show that strong low-ionization cooling lines of X-ray dominated regions like [SiII] 34.82 micron can alternatively be used as excellent discrimants. Finally, the typical target in this sample shows relatively modest interstellar electron density (~400 cm^{-3}) and obscuration (A_V ~ 1.0 mag for a foreground screen), consistent with a lack of dense clumps of highly obscured gas and dust residing in the emitting regions. [Abridged]Comment: Accepted for publication in the Astrophysical Journa

Amyloid precursor protein drives down-regulation of mitochondrial oxidative phosphorylation independent of amyloid beta

Amyloid precursor protein (APP) and its extracellular domain, soluble APP alpha (sAPPα) play important physiological and neuroprotective roles. However, rare forms of familial Alzheimer’s disease are associated with mutations in APP that increase toxic amyloidogenic cleavage of APP and produce amyloid beta (Aβ) at the expense of sAPPα and other non-amyloidogenic fragments. Although mitochondrial dysfunction has become an established hallmark of neurotoxicity, the link between Aβ and mitochondrial function is unclear. In this study we investigated the effects of increased levels of neuronal APP or Aβ on mitochondrial metabolism and gene expression, in human SH-SY5Y neuroblastoma cells. Increased non-amyloidogenic processing of APP, but not Aβ, profoundly decreased respiration and enhanced glycolysis, while mitochondrial DNA (mtDNA) transcripts were decreased, without detrimental effects to cell growth. These effects cannot be ascribed to Aβ toxicity, since higher levels of endogenous Aβ in our models do not cause oxidative phosphorylation (OXPHOS) perturbations. Similarly, chemical inhibition of β-secretase decreased mitochondrial respiration, suggesting that non-amyloidogenic processing of APP may be responsible for mitochondrial changes. Our results have two important implications, the need for caution in the interpretation of mitochondrial perturbations in models where APP is overexpressed, and a potential role of sAPPα or other non-amyloid APP fragments as acute modulators of mitochondrial metabolism

Psychological illness is commonly associated with functional gastrointestinal disorders and is important to consider during patient consultation: a population-based study

BACKGROUND: Some individuals with functional gastrointestinal disorders (FGID) suffer long-lasting symptoms without ever consulting their doctors. Our aim was to study co-morbidity and lifestyle differences among consulters and non-consulters with persistent FGID and controls in a defined adult population. METHODS: A random sample of the general adult Swedish population was obtained by a postal questionnaire. The Abdominal Symptom Questionnaire (ASQ) was used to measure GI symptomatology and grade of GI symptom severity and the Complaint Score Questionnaire (CSQ) was used to measure general symptoms. Subjects were then grouped for study by their symptomatic profiles. Subjects with long-standing FGID (n = 141) and subjects strictly free from gastrointestinal (GI) symptoms (n = 97) were invited to attend their local health centers for further assessment. RESULTS: Subjects with FGID have a higher risk of psychological illness [OR 8.4, CI(95)(4.0–17.5)] than somatic illness [OR 2.8, CI(95)(1.3–5.7)] or ache and fatigue symptoms [OR 4.3, CI(95)(2.1–8.7)]. Subjects with psychological illness have a higher risk of severe GI symptoms than controls; moreover they have a greater chance of being consulters. Patients with FGID have more severe GI symptoms than non-patients. CONCLUSION: There is a strong relation between extra-intestinal, mental and somatic complaints and FGID in both patients and non-patients. Psychological illness increases the chance of concomitantly having more severe GI symptoms, which also enhance consultation behaviour

TFEB regulates murine liver cell fate during development and regeneration

It is well established that pluripotent stem cells in fetal and postnatal liver (LPCs) can differentiate into both hepatocytes and cholangiocytes. However, the signaling pathways implicated in the differentiation of LPCs are still incompletely understood. Transcription Factor EB (TFEB), a master regulator of lysosomal biogenesis and autophagy, is known to be involved in osteoblast and myeloid differentiation, but its role in lineage commitment in the liver has not been investigated. Here we show that during development and upon regeneration TFEB drives the differentiation status of murine LPCs into the progenitor/cholangiocyte lineage while inhibiting hepatocyte differentiation. Genetic interaction studies show that Sox9, a marker of precursor and biliary cells, is a direct transcriptional target of TFEB and a primary mediator of its effects on liver cell fate. In summary, our findings identify an unexplored pathway that controls liver cell lineage commitment and whose dysregulation may play a role in biliary cancer

Listeria monocytogenes Internalin B Activates Junctional Endocytosis to Accelerate Intestinal Invasion

Listeria monocytogenes (Lm) uses InlA to invade the tips of the intestinal villi, a location at which cell extrusion generates a transient defect in epithelial polarity that exposes the receptor for InlA, E-cadherin, on the cell surface. As the dying cell is removed from the epithelium, the surrounding cells reorganize to form a multicellular junction (MCJ) that Lm exploits to find its basolateral receptor and invade. By examining individual infected villi using 3D-confocal imaging, we uncovered a novel role for the second major invasin, InlB, during invasion of the intestine. We infected mice intragastrically with isogenic strains of Lm that express or lack InlB and that have a modified InlA capable of binding murine E-cadherin and found that Lm lacking InlB invade the same number of villi but have decreased numbers of bacteria within each infected villus tip. We studied the mechanism of InlB action at the MCJs of polarized MDCK monolayers and find that InlB does not act as an adhesin, but instead accelerates bacterial internalization after attachment. InlB locally activates its receptor, c-Met, and increases endocytosis of junctional components, including E-cadherin. We show that MCJs are naturally more endocytic than other sites of the apical membrane, that endocytosis and Lm invasion of MCJs depends on functional dynamin, and that c-Met activation by soluble InlB or hepatocyte growth factor (HGF) increases MCJ endocytosis. Also, in vivo, InlB applied through the intestinal lumen increases endocytosis at the villus tips. Our findings demonstrate a two-step mechanism of synergy between Lm's invasins: InlA provides the specificity of Lm adhesion to MCJs at the villus tips and InlB locally activates c-Met to accelerate junctional endocytosis and bacterial invasion of the intestine