Variation in carbon concentrations and allocations among Larix olgensis populations growing in three field environments

Key message Variation in carbon concentration among Larix olgensis A. Henry provenances and tree tissues was significant, suggesting importance of such variation to carbon stock calculation. Provenance variation in carbon allocation was only significant in allocations to some tissues, including stem wood, and was strongly site-specific. Some allocation patterns correlated significantly with provenance growth and were related to geographic/climatic variables at the provenance origins. Context Understanding variation in carbon concentrations and allocations to tree tissues among genetic entries is important for assessing carbon sequestration and understanding differential growth rates among the entries. However, this topic is poorly understood, in particular for mature trees in field conditions. Aims The study aims to assess genetic variation in C concentrations and allocations to tree tissues and further to link the variation to tree growth and to assess their adaptive nature. Methods In 2011, carbon concentrations and allocations to tree tissues (stem wood, stem bark, branches, foliage, and root components) were measured on 31-year-old trees of ten Larix olgensis A. Henry provenances growing at three sites located in northeast China: CuoHai Forest Farm (CH), LiangShui Forest Farm (LS), and MaoErShān Forest Farm (MES). Variation in carbon allocation was analyzed using allometric methods. Results Variation in C concentration among tree tissues and among provenances was significant and site-specific. The crosstissue variation in concentration was driven primarily by high concentration in branches and leaves and low concentration in stem wood and coarse roots. Differences between the minimum and maximum provenance means reached 1% at the tree level. Provenance variation was only significant in allocations to stem wood, branches, and fine roots and was strongly site-specific. Provenance variation in stem wood allocation was independent of provenance growth rate. Some allocation patterns correlated significantly with provenance growth; the faster-growing provenances allocated more to branches and less to fine roots at the LS site, but an opposite pattern was true at MES site. Most significant allocation traits were related to geographic/climatic variables at the provenance origins, but the driving factors varied with site

Genetic diversity analysis and fingerprint construction of Korean pine (Pinus koraiensis) clonal seed orchard

Korean pine is a native tree species in Northeast China. In order to meet the needs of germplasm resource evaluation and molecular marker-assisted breeding of Korean pine, we collected Korean pine clones from 7 populations in Northeast China, analyzed the genetic diversity and genetic structure by SSR molecular marker technology and clustered them to revealed the inter- and intrapopulation differentiation characteristics of each clone. The fingerprint profiles of 161 Korean pine clones were also constructed. 77 alleles were detected for 11 markers, and 18 genotypes were identified on average for each marker. The PIC of the different markers ranged from 0.155-0.855, and the combination of PI and PIsibs for the 11 markers was 3.1 × 10-8 and 1.14 × 10-3, respectively. MANOVA showed that genetic variation existed mainly within populations, accounting for 98% of the total variation. The level of genetic differentiation among populations was low, with an average Nm between populations of 11.036. Genetic diversity is lower in the Lushuihe population and higher in the Tieli population. The 161 Korean pine clones were divided into 4 or 7 populations, and the 7 populations were not clearly distinguished from each other, with only the Lushuihe population showing partial differentiation. There is no significant correlation between the genetic distance of Korean pine populations and the geographical distance of their superior tree sources. This result can provide recommendations for future Korean pine breeding programs. The combination of 11 markers could completely distinguish 161 clones and establish the fingerprint. Genetic diversity of Korean pine clones from the 7 populations was abundant, and the genetic distances of individuals and populations were evenly dispersed. The fingerprint map can be used for the identification of Korean pine clones

The Long-Baseline Neutrino Experiment: Exploring Fundamental Symmetries of the Universe

The preponderance of matter over antimatter in the early Universe, the dynamics of the supernova bursts that produced the heavy elements necessary for life and whether protons eventually decay --- these mysteries at the forefront of particle physics and astrophysics are key to understanding the early evolution of our Universe, its current state and its eventual fate. The Long-Baseline Neutrino Experiment (LBNE) represents an extensively developed plan for a world-class experiment dedicated to addressing these questions. LBNE is conceived around three central components: (1) a new, high-intensity neutrino source generated from a megawatt-class proton accelerator at Fermi National Accelerator Laboratory, (2) a near neutrino detector just downstream of the source, and (3) a massive liquid argon time-projection chamber deployed as a far detector deep underground at the Sanford Underground Research Facility. This facility, located at the site of the former Homestake Mine in Lead, South Dakota, is approximately 1,300 km from the neutrino source at Fermilab -- a distance (baseline) that delivers optimal sensitivity to neutrino charge-parity symmetry violation and mass ordering effects. This ambitious yet cost-effective design incorporates scalability and flexibility and can accommodate a variety of upgrades and contributions. With its exceptional combination of experimental configuration, technical capabilities, and potential for transformative discoveries, LBNE promises to be a vital facility for the field of particle physics worldwide, providing physicists from around the globe with opportunities to collaborate in a twenty to thirty year program of exciting science. In this document we provide a comprehensive overview of LBNE's scientific objectives, its place in the landscape of neutrino physics worldwide, the technologies it will incorporate and the capabilities it will possess.Comment: Major update of previous version. This is the reference document for LBNE science program and current status. Chapters 1, 3, and 9 provide a comprehensive overview of LBNE's scientific objectives, its place in the landscape of neutrino physics worldwide, the technologies it will incorporate and the capabilities it will possess. 288 pages, 116 figure

Expression Pattern Analysis of Larch WRKY in Response to Abiotic Stress

Larix olgensis is one of the most common tree species in Northeast China; it has the advantages of fast growth and good wood properties. In order to accelerate larch molecular breeding and to provide good candidate genes for larch improvement, based on the existing transcriptome data of Larix olgensis, four WRKY family genes with complete CD regions were obtained by BLAST comparison on the NCBI website. The results of bioinformatics analysis and gene expression after abiotic stress showed that there were some differences in the expression of WRKY1, WRKY2, WRKY3 and WRKY4 in roots, stems and leaves under each treatment. Under the treatment of a 40% PEG6000 solution (polyethylene glycol), the expression of WRKY2 was significantly up-regulated in each time period and WRKY1, WRKY3 and WRKY4 were down-regulated in varying degrees compared with the control group, indicating that they were involved in the response to drought stress. Under the treatment of the 0.2mol/L NaCl solution, the expression of WRKY2 was up-regulated in roots, stems and leaves. The expression amount and the expression trend of the other three genes were different in roots, stems and leaves under different treatment durations, indicating that they were also involved in a salt-stress response. Under the treatment of the 0.1 mol/L NaHCO3 solution, the expression of WRKY4 was significantly down-regulated in all time periods, while WRKY2 was significantly up-regulated. The other two genes were regulated to a certain extent, indicating that they also had a physiological response under alkaline conditions. These results lay a foundation for the study of gene function of these four WRKY transcription factors

Expression Pattern Analysis of Larch <i>WRKY</i> in Response to Abiotic Stress

Larix olgensis is one of the most common tree species in Northeast China; it has the advantages of fast growth and good wood properties. In order to accelerate larch molecular breeding and to provide good candidate genes for larch improvement, based on the existing transcriptome data of Larix olgensis, four WRKY family genes with complete CD regions were obtained by BLAST comparison on the NCBI website. The results of bioinformatics analysis and gene expression after abiotic stress showed that there were some differences in the expression of WRKY1, WRKY2, WRKY3 and WRKY4 in roots, stems and leaves under each treatment. Under the treatment of a 40% PEG6000 solution (polyethylene glycol), the expression of WRKY2 was significantly up-regulated in each time period and WRKY1, WRKY3 and WRKY4 were down-regulated in varying degrees compared with the control group, indicating that they were involved in the response to drought stress. Under the treatment of the 0.2mol/L NaCl solution, the expression of WRKY2 was up-regulated in roots, stems and leaves. The expression amount and the expression trend of the other three genes were different in roots, stems and leaves under different treatment durations, indicating that they were also involved in a salt-stress response. Under the treatment of the 0.1 mol/L NaHCO3 solution, the expression of WRKY4 was significantly down-regulated in all time periods, while WRKY2 was significantly up-regulated. The other two genes were regulated to a certain extent, indicating that they also had a physiological response under alkaline conditions. These results lay a foundation for the study of gene function of these four WRKY transcription factors

EST–SSR marker development and transcriptome sequencing analysis of different tissues of Korean pine (Pinus koraiensis Sieb. et Zucc.)

Korean pine is a gymnosperm, and gymnosperms have relatively large genome sequences and lack a model organism reference genome. Understanding the important gene expression in the tissue growth process of needles (T1), stems (T2), female flowers (T3) and cones (T4) of the Korean pine is necessary to develop and compound the enzyme genes related to secondary metabolite synthesis. Simple sequence repeat (SSR) markers were explored based on the expressed sequence tag (EST). High-throughput sequencing technology was used to compare and analyse transcriptomes of four different tissue parts of the Korean pine, yielding many differentially expressed unigene sequences. Fluorescently labelled SSR primers were designed to analyse the polymorphism level of 60 open-pollinated families from the Heilongjiang province of China. The research showed that (1) 21.3 GB of data was obtained from the transcriptome sequencing, and 41,476 candidate unigenes were identified based on sequence annotation using various databases. Clusters from orthologous groups and gene ontology function classification tools were used to divide the annotated transcript sequences into 56 functional categories. (2) Cones had the highest number of expressed genes during puberty, with rich expression as they were being formed. (3) By pathway enrichment analysis, 16 key enzyme genes related to fatty acid synthesis in other homologous species were obtained. (4) Ten novel polymorphic fluorescence labelling were used to identify 60 open-pollinated families with a medium polymorphism level. The research showed that high-throughput sequencing technology could analyse the transcriptome expression level between different organisms, and SSR markers were successfully developed

Growth and Physiological Responses of Norway Spruce (Picea abies (L.) H. Karst) Supplemented with Monochromatic Red, Blue and Far-Red Light

Monochromatic red light (R) supplementation is more efficient than blue light (B) in promoting Norway spruce (Picea abies (L.) H. Karst) growth. Transcriptome analysis has revealed that R and B may regulate stem growth by regulating phytohormones and secondary metabolites; however, the effects of light qualities on physiological responses and related gene expression in Norway spruce require further study. In the present study, three-year-old Norway spruce seedlings received sunlight during the daytime were exposed to monochromatic B (460 mm), monochromatic R (660 nm), monochromatic far-red light (FR, 730 nm), and a combination of three monochromatic lights (control, R:FR:B = 7:1:1) using light-emitting diode (LED) lamps for 12 h after sunset for 90 day. Growth traits, physiological responses, and related gene expression were determined. The results showed that light quality significantly affected Norway spruce growth. The stem height, root collar diameter, and current-year shoot length of seedlings treated with R were 2%, 10% and 12% higher, respectively, than those of the control, whereas seedlings treated with B and FR showed significantly lower values of these parameters compared with that of the control. The net photosynthetic rate (Pn) of seedlings under R treatment was 10% higher than that of the control, whereas the Pn values of seedlings treated with FR and B were 22% and 33%, respectively, lower than that of the control. The ratio of phosphoenolpyruvate carboxylase to ribulose-1,5-bisphosphate carboxylase/oxygenase (PEPC/Rubisco) of seedlings after the R treatment (0.581) was the highest and 3.98 times higher than that of the seedlings treated with B. Light quality significantly affected the gibberellic acid (GAs) levels, which was 13% higher in seedlings treated with R (6.4 g/100 ng) than that of the control, whereas, the GAs level of seedlings treated with B and FR was 17% and 19% lower, respectively, than that of the control. In addition, seedlings treated with R achieved the lowest ratio of leaf chlorophyll content to fresh weight (8.7). Compared to the R and control treatments, seedlings received FR treatment had consistently lower values of the quantum yield of electron transport beyond Q(A)(-) (primary quinone, phi Eo) and efficiency, with which a trapped exciton moves an electron into the electron transport chain beyond Q(A)(-) (psi o), while higher values of the relatively variable fluorescence at the J step and normalized relatively variable fluorescence at the K step (W-k). The values of phi Eo, psi O, V-J and W-k in seedlings treated with B were similar to those in the control group. The expression of genes associated with light signal transduction, such as PHYTOCHROME C (PHYC), ELONGATED HYPOCOTYL5 (HY5), CONSTITUTIVE PHOTOMORPHOGENIC 1-2 (COP1-2), and PHYTOCHROME INTERACTING FACTOR 3 (PIF3), was significantly higher in seedlings under B treatment than those under other light treatments. Nevertheless, significant differences were not observed in the expression of COP1-2, HY5, and PIF3 between the R treatment and the control. The expression value of COP1-2 was significantly lower in R than FR light treatments. In conclusion, compared with the control, R promotes, whereas B and FR inhibit Norway spruce growth, which was accompanied by physiological changes and genes expression regulation that may be relate to a changing phytochrome photostationary state (PSS) with the supplemental R in seedlings

Isolation and Identification Rust Pathogens and the Study of Antioxidant Enzyme Activity and Gene Expression under Rust Infection in Zoysia japonica

The goal of this study was to identify the zoysiagrass rust pathogens and to analyze the differences in rust-resistant and rust-susceptible Zoysia japonica germplasm upon inoculation. Based on the assessment of spore morphology and 18S ribosomal DNA (rDNA) molecular identification, the zoysiagrass rust pathogen was identified as Puccinia zoysiae Diet. The development of mycelium, the rate of spreading, and the timing of spore production were more delayed in the rust-resistant (RR) genotype than the rust-susceptible (RS) genotype. After inoculation, the activities of superoxide dismutase (SOD), catalase (CAT), and ascorbate peroxidase (APX) initially decreased, then increased in both the RR and RS genotypes, but the increased enzyme activities were faster in the RR than in the RS genotype. Rust resistance was positively correlated with antioxidant enzyme activity. The observed changes in CAT, POD and APX activity corresponded to their gene expression levels. The results of this study may be utilized in accurately evaluating the damage of rust disease and rust-resistance in zoysiagrass germplasm aimed at breeding the rust-resistant zoysiagrass varieties and improving disease management of zoysiagrass turf

Function of MYB8 in larch under PEG simulated drought stress

Abstract Larch, a prominent afforestation, and timber species in northeastern China, faces growth limitations due to drought. To further investigate the mechanism of larch’s drought resistance, we conducted full-length sequencing on embryonic callus subjected to PEG-simulated drought stress. The sequencing results revealed that the differentially expressed genes (DEGs) primarily played roles in cellular activities and cell components, with molecular functions such as binding, catalytic activity, and transport activity. Furthermore, the DEGs showed significant enrichment in pathways related to protein processing, starch and sucrose metabolism, benzose-glucuronic acid interconversion, phenylpropyl biology, flavonoid biosynthesis, as well as nitrogen metabolism and alanine, aspartic acid, and glutamic acid metabolism. Consequently, the transcription factor T_transcript_77027, which is involved in multiple pathways, was selected as a candidate gene for subsequent drought stress resistance tests. Under PEG-simulated drought stress, the LoMYB8 gene was induced and showed significantly upregulated expression compared to the control. Physiological indices demonstrated an improved drought resistance in the transgenic plants. After 48 h of PEG stress, the transcriptome sequencing results of the transiently transformed LoMYB8 plants and control plants exhibited that genes were significantly enriched in biological process, cellular component and molecular function. Function analyses indicated for the enrichment of multiple KEGG pathways, including energy synthesis, metabolic pathways, antioxidant pathways, and other relevant processes. The pathways annotated by the differential metabolites mainly encompassed signal transduction, carbohydrate metabolism, amino acid metabolism, and flavonoid metabolism