Development of disease control strategies for organically grown field vegetables (DOVE) (OF0168)

This is the final report of Defra project OF0168 (DOVE). The attached main report starts with a more detailed and comprehensive Executive Summary, from which this text has been extracted. This project aimed to improve understanding and awareness of diseases in organic field vegetables. Diseases pose a threat to both quality and yield, and both must be managed if organic production is to expand and remain sustainable. Objective 1. To review the significance of diseases in organically grown field vegetables and the potential effectiveness of current control strategies when the scale of production is increased. Objective 2. To evaluate novel techniques and strategies for control of diseases in organically grown field vegetables Objective 3. To monitor disease development in organic crops in relation to rotation and size of enterprise. Objective 4. To update, produce and publicise advisory literature for disease control in organic field vegetables. Literature review The philosophy of disease control in organic systems was reviewed together with recent literature on diseases and disease control in organic field vegetables. A wider literature on disease control in conventional agriculture and horticulture was also considered in order to provide novel approaches for organic producers. Novel approaches The benefits of using wider plant spacing and mulches of paper or black, red or blue polythene for control of lettuce diseases was investigated in two replicated field experiments on cv. Saladin in 1999. Lettuce variety mixtures were used to investigate their value for control of downy mildew. Mixtures often have positive effects in addition against pests, weeds and abiotic stress. Glasshouse experiments with foliar spray treatments were carried out to determine the spectrum of activity of a range of organic treatments against lettuce downy mildew, grey mould of lettuce and dark leaf spot of brassicas. All treatments gave significant control of lettuce downy mildew and dark leaf spot, but none (except the conventional standard) showed activity against grey mould. Field evaluation of foliar treatments was carried out in 2000 and 2001. It would appear that some organic treatments can provide effective control of foliar diseases, but they need to be used as protectant sprays with a short interval between treatments. Soil amendments with green crop residues, composts, manures and other treatments were evaluated in glasshouse pot experiments against various soil-borne diseases with mixed results. Disease monitoring Disease observations were made on 5 organic farms selected to provide different scales of production and contrasting regional differences. The results provide new information to suggest that larger scale production is more prone to disease problems. This observation is consistent with other epidemiological studies, including the mixture effect, which suggest that increasing the diversity of potential disease hosts per unit area tends to reduce the probability of infection. The presence of the weed parasite spores and of semiochemicals released from the weeds could have some influence in restricting disease development in crops through induction of resistance. Growers reported that potato blight was the most frequent problem each year during 1999-2001, followed by downy mildews on onions, brassica seedlings and lettuce, celery leaf spot and leek rust. Conclusions Diseases are common in organic vegetable crops, but severe infection leading to significant losses of yield or quality affected few crops (11%). Seed-borne diseases are important and availability of healthy seed would reduce losses in vegetables. Soil-borne diseases continue to trouble organic growers and can be managed through rotation or avoiding badly infested areas. Organic growers can exploit genetic diversity through cultivar and species mixtures, but development and guidance is required to develop practical systems. Disease management using organic conditioners, biological control agents and soil amendments merit investigation in farm-scale experiments. Key components of disease management strategies for organic vegetables have been made available to growers in a booklet produced as part of this project

Searching for Cooling Signatures in Strong Lensing Galaxy Clusters: Evidence Against Baryons Shaping the Matter Distribution in Cluster Cores

The process by which the mass density profile of certain galaxy clusters becomes centrally concentrated enough to produce high strong lensing (SL) cross-sections is not well understood. It has been suggested that the baryonic condensation of the intra-cluster medium (ICM) due to cooling may drag dark matter to the cores and thus steepen the profile. In this work, we search for evidence of ongoing ICM cooling in the first large, well-defined sample of strong lensing selected galaxy clusters in the range 0.1 < z < 0.6. Based on known correlations between the ICM cooling rate and both optical emission line luminosity and star formation, we measure, for a sample of 89 strong lensing clusters, the fraction of clusters that have [OII]3727 emission in their brightest cluster galaxy (BCG). We find that the fraction of line-emitting BCGs is constant as a function of redshift for z > 0.2 and shows no statistically significant deviation from the total cluster population. Specific star formation rates, as traced by the strength of the 4000 angstrom break, D_4000, are also consistent with the general cluster population. Finally, we use optical imaging of the SL clusters to measure the angular separation, R_arc, between the arc and the center of mass of each lensing cluster in our sample and test for evidence of changing [OII] emission and D_4000 as a function of R_arc, a proxy observable for SL cross-sections. D_4000 is constant with all values of R_arc, and the [OII] emission fractions show no dependence on R_arc for R_arc > 10" and only very marginal evidence of increased weak [OII] emission for systems with R_arc < 10". These results argue against the ability of baryonic cooling associated with cool core activity in the cores of galaxy clusters to strongly modify the underlying dark matter potential, leading to an increase in strong lensing cross-sections.Comment: 9 Pages, 5 Figures, 1 Tabl

First record of verticillium wilt (Verticillium longisporum) in winter oilseed rape in the UK

Verticillium longisporum is an important pathogen of oilseed rape (OSR) and vegetable brassicas in several European countries, but has not been reported previously in the UK (Karapapa et al., 1997; Steventon et al., 2002). In 2007, Verticillium wilt was suspected in UK crops of winter OSR (W-OSR) on cv. Castille in Romney Marsh, Kent and on cv. Barrel near Hereford. At these two locations, 32 and 10% of the plants, respectively, appeared to be affected, but the presence of stem canker may have masked some infections. Symptoms were first seen as the crops began to ripen (seeds green-brown to brown, Growth Stage: 6,4-6,5) and included brown and dark grey vertical bands on the stems from soil level into the branches, and premature ripening of some branches (Fig. 1). Microsclerotia were observed on stem samples collected in the field (Fig. 2), suggesting V. longisporum as the causal agent. Cultures were prepared from field samples by immersing stem pieces in 5% sodium hypochlorite solution for one minute, washing twice in sterile distilled water and plating onto potato dextrose agar containing 25 mg/l streptomycin sulphate. Isolates from three plants per outbreak were identified morphologically as V. longisporum. Mean conidial dimensions (25 spores per isolate) were 8.80-9.65 μm (length) and 2.50-2.85 μm (width) and all isolates produced elongated microsclerotia, characters typical of V. longisporum (Karapapa et al., 1997). The identity was confirmed by PCR using species-specific primers (Steventon et al., 2002) and, as a member of the α sub-group, by direct sequencing of the amplicons from primer pairs ITS4-ITS5 and DB19-DB22 (Collins et al., 2003; 2005). Sequences for isolate 003 from Kent were deposited in GenBank (Accession Nos. HQ702376 and HQ702377). All isolates tested from 2008 and 2009 were identical with previously deposited sequences for European OSR isolates (e.g. AF363992 and AF363246 respectively). Pathogenicity was confirmed by inoculating three OSR cv. Castille seedlings per isolate using the root dip technique with 1 x 106 spores/ml (Karapapa et al., 1997) under heated glasshouse conditions at 19°C. Leaf yellowing and blackening of the leaf veins were found 26 days after inoculation (Fig. 3). Yellowing affecting the three oldest leaves increased for seven to nine days. After five weeks the final mean leaf area affected was 63-78% with no differences between isolates. No leaf yellowing occurred in the controls. After five weeks, V. longisporum was re-isolated from all the inoculated seedlings, but not from the non-inoculated controls. In June 2008, infection of W-OSR crops in different fields on the same farms was found on cv. Es Astrid in Kent (56% incidence) and on cv. Lioness in Hereford (15% incidence). The Kent farm had been growing W-OSR alternating with winter wheat for at least 10 years whilst the Hereford farm had grown W-OSR one year in four. These short rotations of OSR may be contributing to the appearance of this disease. This study confirms the identification of V. longisporum on any host in the UK, through molecular studies and detailed spore measurements that were not reported in an earlier review (Gladders, 2009). This pathogen occurs in several European countries and, since OSR may be traded freely, following a Defra consultation, no statutory plant health action is to be taken

The Optical Afterglow of GRB 011211

We present early-time optical photometry and spectroscopy of the optical afterglow of the gamma-ray burst GRB 011211. The spectrum of the optical afterglow contains several narrow metal lines which are consistent with the burst occurring at a redshift of 2.140 +/- 0.001. The optical afterglow decays as a power law with a slope of alpha = 0.83 +/- 0.04 for the first approximately two days after the burst at which time there is evidence for a break. The slope after the break is at least 1.4. There is evidence for rapid variations in the R-band light approximately 0.5 days after the burst. These variations suggest that there are density fluctuations near the gamma-ray burst on spatial scales of approximately 40--125 AU. The magnitude of the break in the light curve, the spectral slope, and the rate of decay in the optical, suggest that the burst expanded into an ambient medium that is homogeneous on large scales. We estimate that the local particle density is between approximately 0.1 and 10 cm^{-3} and that the total gamma-ray energy in the burst was 1.2--1.9 x 10^{50} erg. This energy is smaller than, but consistent with, the ``standard'' value of (5 +/- 2) x 10^{50} erg. Comparing the observed color of the optical afterglow with predictions of the standard beaming model suggests that the rest-frame V-band extinction in the host galaxy is less than approximately 0.03 mag.Comment: 17 pages, 4 figures, AASTeX 5.02, to appear in AJ Referee's report incorporated, minor changes in the tex

A Spectroscopic Survey of a Sample of Active M Dwarfs

A moderate resolution spectroscopic survey of Fleming's sample of 54 X-ray selected M dwarfs with photometric distances less than 25 pc is presented. Radial and rotation velocities have been measured by fits to the H-alpha profiles. Radial velocities have been measured by cross correlation. Artificial broadening of an observed spectrum has produced a relationship between H-alpha FWHM and rotation speed, which we use to infer rotation speeds for the entire sample by measurement of the H-alpha emission line. We find 3 ultra-fast rotators (UFRs, vsini > 100km/s), and 8 stars with 30 < vsini < 100 km/s. The UFRs have variable emission. Cross-correlation velocities measured for ultra-fast rotators (UFRs) are shown to depend on rotation speed and the filtering used. The radial velocity dispersion of the sample is 17 km/s. A new double emission line spectroscopic binary with a period of 3.55 days has been discovered, and another known one is in the sample. Three other objects are suspected spectroscopic binaries, and at least six are visual doubles. The only star in the sample observed to have significant lithium is a known TW Hya Association member, TWA 8A. These results show that there are a number of young (< 10^8 yr) and very young (< 10^7 yr) low mass stars in the immediate solar neighbourhood. The H-alpha activity strength does not depend on rotation speed. Our fast rotators are less luminous than similarly fast rotators in the Pleiades. They are either younger than the Pleiades, or gained angular momentum in a different way.Comment: 38 pages incl. 14 figures and 4 tables, plus 12 pages of table for electronic journal only; LaTeX, aastex.cls. Accepted 07/18/02 for publication in The Astronomical Journa

IDCS J1426.5+3508: Cosmological implications of a massive, strong lensing cluster at Z = 1.75

The galaxy cluster IDCS J1426.5+3508 at z = 1.75 is the most massive galaxy cluster yet discovered at z > 1.4 and the first cluster at this epoch for which the Sunyaev-Zel'Dovich effect has been observed. In this paper we report on the discovery with HST imaging of a giant arc associated with this cluster. The curvature of the arc suggests that the lensing mass is nearly coincident with the brightest cluster galaxy, and the color is consistent with the arc being a star-forming galaxy. We compare the constraint on M200 based upon strong lensing with Sunyaev-Zel'Dovich results, finding that the two are consistent if the redshift of the arc is z > 3. Finally, we explore the cosmological implications of this system, considering the likelihood of the existence of a strongly lensing galaxy cluster at this epoch in an LCDM universe. While the existence of the cluster itself can potentially be accomodated if one considers the entire volume covered at this redshift by all current high-redshift cluster surveys, the existence of this strongly lensed galaxy greatly exacerbates the long-standing giant arc problem. For standard LCDM structure formation and observed background field galaxy counts this lens system should not exist. Specifically, there should be no giant arcs in the entire sky as bright in F814W as the observed arc for clusters at z \geq 1.75, and only \sim 0.3 as bright in F160W as the observed arc. If we relax the redshift constraint to consider all clusters at z \geq 1.5, the expected number of giant arcs rises to \sim15 in F160W, but the number of giant arcs of this brightness in F814W remains zero. These arc statistic results are independent of the mass of IDCS J1426.5+3508. We consider possible explanations for this discrepancy.Comment: 7 pages, 4 figures, Accepted to The Astrophysical Journa

XMM-Newton/SDSS: star formation efficiency in galaxy clusters and constraints on the matter density parameter

It is believed that the global baryon content of clusters of galaxies is representative of the matter distribution of the universe, and can, therefore, be used to reliably determine the matter density parameter Omega_m. This assumption is challenged by the growing evidence from optical and X-ray observations that the total baryon mass fraction increases towards rich clusters. In this context, we investigate the dependence of stellar, and total baryon mass fractions as a function of mass. To do so, we used a subsample of nineteen clusters extracted from the X-ray flux limited sample HIFLUGCS that have available DR-7 Sloan Digital Sky Survey (SDSS) data. From the optical analysis we derived the stellar masses. Using XMM-Newton we derived the gas masses. Then, adopting a scaling relation we estimate the total masses. Adding the gas and the stellar mass fractions we obtain the total baryonic content that we find to increase with cluster mass, reaching 7-year Wilkinson Microwave Anisotropy Probe (WMAP-7) prediction for clusters with M_500 = 1.6 x 10^{15} M_sun. We observe a decrease of the stellar mass fraction (from 4.5% to ~1.0%) with increasing total mass where our findings for the stellar mass fraction agree with previous studies. This result suggests a difference in the number of stars formed per unit of halo mass, though with a large scatter for low-mass systems. That is, the efficiency of star formation varies on cluster scale that lower mass systems are likely to have higher star formation efficiencies. It follows immediately that the dependence of the stellar mass fraction on total mass results in an increase of the mass-to-light ratio from lower to higher mass systems. We also discuss the consequences of these results in the context of determining the cosmic matter density parameter Omega_m.Comment: Accepted for publication in ApJ, 11 pages, 5 figures. http://stacks.iop.org/0004-637X/743/1

Dynamical modeling of the C iv broad line region of the z=2.805 multiply imaged quasar SDSS J2222+2745

P.W. and T.T. gratefully acknowledge support by the National Science Foundation through grant AST-1907208 "Collaborative Research: Establishing the foundations of black hole mass measurements of AGN across cosmic time" and by the Packard Foundation through a Packard Research Fellowship to T.T. Research at UC Irvine was supported by NSF grant AST-1907290. K.H. acknowledges support from STFC grant ST/R000824/1.We present the first ever models of a broad line region (BLR) at the peak of active galactic nucleus (AGN) activity using the multiply imaged z = 2.805 quasar SDSS J2222+2745. The modeled data consist of monthly spectra covering the broad C IV emission line over a 5.3 yr baseline. The models suggest a thick disk BLR that is inclined by degrees 40 degrees to the observer's line of sight and with an emissivity weighted median radius of = rmedian = 33.0(-2.1)(+2.44) light days. The kinematics are dominated by near-circular Keplerian motion with the remainder inflowing. The restframe lag one would measure from the models is taumedian = 36.4(-1.8)(+1.8) days, which is consistent with measurements based on cross-correlation. We show a possible geometry and transfer function based on the model fits and find that the model-produced velocity-resolved lags are consistent with those from cross-correlation. We measure a black hole mass of log10(MBH/M⊙) = 8.31(-0.06)(+0.07), which requires a scale factor of log10 (fmean,σ) = 0.20(-0.07)(+0.09.). This is the most precise MBH measurement for any AGN at cosmological distances and it demonstrates that the precision required for BH-host coevolution studies is attainable.PostprintPeer reviewe

The XMM Cluster Survey: Forecasting cosmological and cluster scaling-relation parameter constraints

We forecast the constraints on the values of sigma_8, Omega_m, and cluster scaling relation parameters which we expect to obtain from the XMM Cluster Survey (XCS). We assume a flat Lambda-CDM Universe and perform a Monte Carlo Markov Chain analysis of the evolution of the number density of galaxy clusters that takes into account a detailed simulated selection function. Comparing our current observed number of clusters shows good agreement with predictions. We determine the expected degradation of the constraints as a result of self-calibrating the luminosity-temperature relation (with scatter), including temperature measurement errors, and relying on photometric methods for the estimation of galaxy cluster redshifts. We examine the effects of systematic errors in scaling relation and measurement error assumptions. Using only (T,z) self-calibration, we expect to measure Omega_m to +-0.03 (and Omega_Lambda to the same accuracy assuming flatness), and sigma_8 to +-0.05, also constraining the normalization and slope of the luminosity-temperature relation to +-6 and +-13 per cent (at 1sigma) respectively in the process. Self-calibration fails to jointly constrain the scatter and redshift evolution of the luminosity-temperature relation significantly. Additional archival and/or follow-up data will improve on this. We do not expect measurement errors or imperfect knowledge of their distribution to degrade constraints significantly. Scaling-relation systematics can easily lead to cosmological constraints 2sigma or more away from the fiducial model. Our treatment is the first exact treatment to this level of detail, and introduces a new `smoothed ML' estimate of expected constraints.Comment: 28 pages, 17 figures. Revised version, as accepted for publication in MNRAS. High-resolution figures available at http://xcs-home.org (under "Publications"

The GALEX Ultraviolet Atlas of Nearby Galaxies

We present images, integrated photometry, surface-brightness and color profiles for a total of 1034 nearby galaxies recently observed by the GALEX satellite in its far-ultraviolet (FUV; 1516A) and near-ultraviolet (NUV; 2267A) bands. (...) This data set has been complemented with archival optical, near-infrared, and far-infrared fluxes and colors. We find that the integrated (FUV-K) color provides robust discrimination between elliptical and spiral/irregular galaxies and also among spiral galaxies of different sub-types. Elliptical galaxies with brighter K-band luminosities (i.e. more massive) are redder in (NUV-K) color but bluer in (FUV-NUV) than less massive ellipticals. In the case of the spiral/irregular galaxies our analysis shows the presence of a relatively tight correlation between the (FUV-NUV) color and the total infrared-to-UV ratio. The correlation found between (FUV-NUV) color and K-band luminosity (with lower luminosity objects being bluer than more luminous ones) can be explained as due to an increase in the dust content with galaxy luminosity. The images in this Atlas along with the profiles and integrated properties are publicly available through a dedicated web page at http://nedwww.ipac.caltech.edu/level5/GALEX_Atlas/Comment: 181 pages, 10 figures, accepted for publication in ApJS (abstract abridged