ExaHyPE: An engine for parallel dynamically adaptive simulations of wave problems

ExaHyPE (“An Exascale Hyperbolic PDE Engine”) is a software engine for solving systems of first-order hyperbolic partial differential equations (PDEs). Hyperbolic PDEs are typically derived from the conservation laws of physics and are useful in a wide range of application areas. Applications powered by ExaHyPE can be run on a student’s laptop, but are also able to exploit thousands of processor cores on state-of-the-art supercomputers. The engine is able to dynamically increase the accuracy of the simulation using adaptive mesh refinement where required. Due to the robustness and shock capturing abilities of ExaHyPE’s numerical methods, users of the engine can simulate linear and non-linear hyperbolic PDEs with very high accuracy. Users can tailor the engine to their particular PDE by specifying evolved quantities, fluxes, and source terms. A complete simulation code for a new hyperbolic PDE can often be realised within a few hours — a task that, traditionally, can take weeks, months, often years for researchers starting from scratch. In this paper, we showcase ExaHyPE’s workflow and capabilities through real-world scenarios from our two main application areas: seismology and astrophysics

The EU Center of Excellence for Exascale in Solid Earth (ChEESE): Implementation, results, and roadmap for the second phase

publishedVersio

Vectorization and Minimization of Memory Footprint for Linear High-Order Discontinuous Galerkin Schemes

We present a sequence of optimizations to the performance-critical compute kernels of the high-order discontinuous Galerkin solver of the hyperbolic PDE engine ExaHyPE -- successively tackling bottlenecks due to SIMD operations, cache hierarchies and restrictions in the software design. Starting from a generic scalar implementation of the numerical scheme, our first optimized variant applies state-of-the-art optimization techniques by vectorizing loops, improving the data layout and using Loop-over-GEMM to perform tensor contractions via highly optimized matrix multiplication functions provided by the LIBXSMM library. We show that memory stalls due to a memory footprint exceeding our L2 cache size hindered the vectorization gains. We therefore introduce a new kernel that applies a sum factorization approach to reduce the kernel's memory footprint and improve its cache locality. With the L2 cache bottleneck removed, we were able to exploit additional vectorization opportunities, by introducing a hybrid Array-of-Structure-of-Array data layout that solves the data layout conflict between matrix multiplications kernels and the point-wise functions to implement PDE-specific terms. With this last kernel, evaluated in a benchmark simulation at high polynomial order, only 2\% of the floating point operations are still performed using scalar instructions and 22.5\% of the available performance is achieved.Comment: PDSEC 202

Chapter 9. Universal DVB-3GPP broadcast layer, an enabler for new business in mobile broadcasting landscape

This chapter aims at promoting the tremendous asset a cooperation of broadband and broadcast deliveries could provide to cope with the data tsunami announced for the mobile access networks. A clever blend of state-of-the-art 3GPP and DVB standards has been designed to provide a broadcast overlay optimized for mobile and operated in conjunction with a broadband unicast access. This chapter highlights the win-win situation for each actor of the multimedia value chain, which should result from such broadband/broadcast cooperation

Prospective observational cohort study on grading the severity of postoperative complications in global surgery research

Background The Clavien–Dindo classification is perhaps the most widely used approach for reporting postoperative complications in clinical trials. This system classifies complication severity by the treatment provided. However, it is unclear whether the Clavien–Dindo system can be used internationally in studies across differing healthcare systems in high- (HICs) and low- and middle-income countries (LMICs). Methods This was a secondary analysis of the International Surgical Outcomes Study (ISOS), a prospective observational cohort study of elective surgery in adults. Data collection occurred over a 7-day period. Severity of complications was graded using Clavien–Dindo and the simpler ISOS grading (mild, moderate or severe, based on guided investigator judgement). Severity grading was compared using the intraclass correlation coefficient (ICC). Data are presented as frequencies and ICC values (with 95 per cent c.i.). The analysis was stratified by income status of the country, comparing HICs with LMICs. Results A total of 44 814 patients were recruited from 474 hospitals in 27 countries (19 HICs and 8 LMICs). Some 7508 patients (16·8 per cent) experienced at least one postoperative complication, equivalent to 11 664 complications in total. Using the ISOS classification, 5504 of 11 664 complications (47·2 per cent) were graded as mild, 4244 (36·4 per cent) as moderate and 1916 (16·4 per cent) as severe. Using Clavien–Dindo, 6781 of 11 664 complications (58·1 per cent) were graded as I or II, 1740 (14·9 per cent) as III, 2408 (20·6 per cent) as IV and 735 (6·3 per cent) as V. Agreement between classification systems was poor overall (ICC 0·41, 95 per cent c.i. 0·20 to 0·55), and in LMICs (ICC 0·23, 0·05 to 0·38) and HICs (ICC 0·46, 0·25 to 0·59). Conclusion Caution is recommended when using a treatment approach to grade complications in global surgery studies, as this may introduce bias unintentionally

Critical care admission following elective surgery was not associated with survival benefit: prospective analysis of data from 27 countries

This was an investigator initiated study funded by Nestle Health Sciences through an unrestricted research grant, and by a National Institute for Health Research (UK) Professorship held by RP. The study was sponsored by Queen Mary University of London

The surgical safety checklist and patient outcomes after surgery: a prospective observational cohort study, systematic review and meta-analysis

© 2017 British Journal of Anaesthesia Background: The surgical safety checklist is widely used to improve the quality of perioperative care. However, clinicians continue to debate the clinical effectiveness of this tool. Methods: Prospective analysis of data from the International Surgical Outcomes Study (ISOS), an international observational study of elective in-patient surgery, accompanied by a systematic review and meta-analysis of published literature. The exposure was surgical safety checklist use. The primary outcome was in-hospital mortality and the secondary outcome was postoperative complications. In the ISOS cohort, a multivariable multi-level generalized linear model was used to test associations. To further contextualise these findings, we included the results from the ISOS cohort in a meta-analysis. Results are reported as odds ratios (OR) with 95% confidence intervals. Results: We included 44 814 patients from 497 hospitals in 27 countries in the ISOS analysis. There were 40 245 (89.8%) patients exposed to the checklist, whilst 7508 (16.8%) sustained ≥1 postoperative complications and 207 (0.5%) died before hospital discharge. Checklist exposure was associated with reduced mortality [odds ratio (OR) 0.49 (0.32–0.77); P\u3c0.01], but no difference in complication rates [OR 1.02 (0.88–1.19); P=0.75]. In a systematic review, we screened 3732 records and identified 11 eligible studies of 453 292 patients including the ISOS cohort. Checklist exposure was associated with both reduced postoperative mortality [OR 0.75 (0.62–0.92); P\u3c0.01; I2=87%] and reduced complication rates [OR 0.73 (0.61–0.88); P\u3c0.01; I2=89%). Conclusions: Patients exposed to a surgical safety checklist experience better postoperative outcomes, but this could simply reflect wider quality of care in hospitals where checklist use is routine