Filtered_RADseq_datasets_crested_porcupine

This file contains three datasets of African porcupines (*Hystrix cristata* and *H. africaeaustralis*) samples as presented in the paper "Long live the alien: is high genetic diversity a pivotal aspect of crested porcupine (*Hystrix cristata*) long-lasting and successful invasion?" doi: 10.1111/mec.13698. Data were produced by single-digestion RAD sequencing using SbfI as restriction enzyme and analyzed in Stacks (Catchen et al. 2013) using denovo_map.pl. Catalogs of RAD loci were exported using export_sql.pl script in the Stacks package and further filtered using the custom python script “loci_selector.py” released as Supplementary Material in the above mentioned publication

SupplTable1

Supplementary Table

Dataset1

Dataset D

Dataset3

Dataset D

Dataset2

Dataset D

SupplFig3

Supplementary Figure

SupplFig2

Supplementary Figure

La Petite presse : journal quotidien... / [rédacteur en chef : Balathier Bragelonne]

30 janvier 18721872/01/30 (A6,N2090)

Appendix 1

Metadata for all samples employed in the study

Reduced reference genome and bismark output files

Reduced representation genome sequences built concatenating RADseq loci in Heliosperma and Dactylorhiza. Bismark output files for the three experiment described in the paper