60 research outputs found

    Generalized Calogero-Moser-Sutherland models from geodesic motion on GL(n, R) group manifold

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    It is shown that geodesic motion on the GL(n, R) group manifold endowed with the bi-invariant metric d s^2 = tr(g^{-1} d g)^2 corresponds to a generalization of the hyperbolic n-particle Calogero-Moser-Sutherland model. In particular, considering the motion on Principal orbit stratum of the SO(n, R) group action, we arrive at dynamics of a generalized n-particle Calogero-Moser-Sutherland system with two types of internal degrees of freedom obeying SO(n, R) \bigoplus SO(n, R) algebra. For the Singular orbit strata of SO(n, R) group action the geodesic motion corresponds to certain deformations of the Calogero-Moser-Sutherland model in a sense of description of particles with different masses. The mass ratios depend on the type of Singular orbit stratum and are determined by its degeneracy. Using reduction due to discrete and continuous symmetries of the system a relation to II A_n Euler-Calogero-Moser-Sutherland model is demonstrated.Comment: 16 pages, LaTeX, no figures. V2: Typos corrected, two references added. V3: Abstract changed, typos corrected, a few formulas and references added. The presentation in the last section has been clarified and it was restricted to the case of GL(3, R) group, the analysis of GL(4, R) will be given elsewhere. V4: Minor corrections in the whole text, more formulas and references added, accepted for publication in PL

    In vivo spectroscopy and NMR metabolite fingerprinting approaches to connect the dynamics of photosynthetic and metabolic phenotypes in resurrection plant Haberlea rhodopensis during desiccation and recovery.

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    International audienceThe resurrection plant Haberlea rhodopensis was used to study dynamics of drought response of photosynthetic machinery parallel with changes in primary metabolism. A relation between leaf water content and photosynthetic performance was established, enabling us to perform a non-destructive evaluation of the plant water status during stress. Spectroscopic analysis of photosynthesis indicated that, at variance with linear electron flow (LEF) involving photosystem (PS) I and II, cyclic electron flow around PSI remains active till almost full dry state at the expense of the LEF, due to the changed protein organization of photosynthetic apparatus. We suggest that, this activity could have a photoprotective role and prevent a complete drop in adenosine triphosphate (ATP), in the absence of LEF, to fuel specific energy-dependent processes necessary for the survival of the plant, during the late states of desiccation. The NMR fingerprint shows the significant metabolic changes in several pathways. Due to the declining of LEF accompanied by biosynthetic reactions during desiccation, a reduction of the ATP pool during drought was observed, which was fully and quickly recovered after plants rehydration. We found a decline of valine accompanied by lipid degradation during stress, likely to provide alternative carbon sources for sucrose accumulation at late stages of desiccation. This accumulation, as well as the increased levels of glycerophosphodiesters during drought stress could provide osmoprotection to the cells

    Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

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    Epigenetic modifications play a vital role in the preservation of genome integrity and in the regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic control, impacts growth, development, stress response and adaptability of all organisms, including plants. The detection of DNA methylation marks is crucial for understanding the mechanisms underlying these processes and for developing strategies to improve productivity and stress resistance of crop plants. There are different methods for detecting plant DNA methylation, such as bisulfite sequencing, methylation-sensitive amplified polymorphism, genome-wide DNA methylation analysis, methylated DNA immunoprecipitation sequencing, reduced representation bisulfite sequencing, MS and immuno-based techniques. These profiling approaches vary in many aspects, including DNA input, resolution, genomic region coverage, and bioinformatics analysis. Selecting an appropriate methylation screening approach requires an understanding of all these techniques. This review provides an overview of DNA methylation profiling methods in crop plants, along with comparisons of the efficacy of these techniques between model and crop plants. The strengths and limitations of each methodological approach are outlined, and the importance of considering both technical and biological factors are highlighted. Additionally, methods for modulating DNA methylation in model and crop species are presented. Overall, this review will assist scientists in making informed decisions when selecting an appropriate DNA methylation profiling method
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