17 research outputs found

    Nucleosome occupancy data.

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    <p>Mean AUCs for the nucleosome occupancy datasets and approaches as described in the text. Reported values are from Gupta <i>et al.</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027382#pone.0027382-Gupta1" target="_blank">[4]</a>. The DMFS pipeline results are stable with small standard deviations as determined by 40 runs with random data partitioning: Dennis data with (a) default parameter settings: 0.0055 (SVM) and 0.0036 (RF), and (b) tuned parameter settings: 0.0048 (SVM) and 0.0041 (RF); Ozsolak data with (a) default parameter settings: 0.0084 (SVM) and 0.0078 (RF), and (b) tuned parameter settings: 0.011 (SVM) and 0.0086 (RF).</p

    ROC curves from DMFS and enumerative methods for the nucleosome occupancy datasets.

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    <p>The red and green curves are from Gupta <i>et al.. </i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027382#pone.0027382-Gupta1" target="_blank">[4]</a> for the Dennis and Ozsolak data respectively. The black and blue curves are from the DMFS method for the Dennis and Ozsolak data respectively. For both datasets, the DMFS ROC curve is approximately equal to the ROC curve using enumerative feature generation. This figure was created by manipulating <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027382#pone-0027382-g001" target="_blank">Figure 1</a> of Gupta <i>et al.. </i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027382#pone.0027382-Gupta1" target="_blank">[4]</a> in GIMP. The DMFS ROC curves are relative stable. As the false positive rate ranges from 10% to 90% the true positive rate standard deviations have range to for the Dennis data and to for the Ozsolak data.</p

    Effects of RDTF on bone histological examination in the bone defect area.

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    (A) Hematoxylin and eosin staining (top) and modified red O-solid green cartilage staining (bottom) of the bone defect tissue in the typical models in the empty control (ECG), induced membrane (IMG), and flavonoid-treated (IFG) groups. (B) Angiographic results of bone defect tissue in each group.</p