Model independent analysis of nearly L\'evy correlations

A model-independent method for the analysis of the two-particle short-range correlations is presented, that can be utilized to describe e.g. Bose-Einstein (HBT), dynamical (ridge) or other correlation functions, that have a nearly L\'evy or streched exponential shape. For the special case of L\'evy exponent alpha = 1, the earlier Laguerre expansions are recovered, for the alpha = 2 special case, a new expansion method is obtained for nearly Gaussian correlation functions. Multi-dimensional L\'evy expansions are also introduced and their potential application to analyze rigde correlation data is discussed

Toetsontwikkeling op virussen in Zantedeschia

Zantedeschia (=Calla) heeft zich ontwikkeld tot een belangrijk siergewas. Voor de productie van snijbloemen en potplanten is een goede kwaliteit vereist. Virus kan een sterk negatieve invloed hebben op de kwaliteit door o.a. groeimisvorming en kleurbreking op blad en bloem. Een kleine tien jaar geleden is de BKD op verzoek van het vak gestart met een keuring op o.a. zichtbaar virus. Sinds het groeiseizoen van 2003 zijn de virusproblemen ondanks de keuring alleen maar groter geworden. Het beperken van virusverspreiding in Zantedeschia is daarom recent in detail bestudeerd (PT-project 12048). Daarnaast is een goed toetsenpakket belangrijk om virusvrij uitgangsmateriaal te kunnen realiseren. Zonder robuuste toetsen op virussen in Zantedeschia is dit haast onmogelijk te verwezenlijken. Er zijn veel verschillende virussen gevonden in Zanedeschia en dit aantal is de afgelopen jaren verder gestegen. Een aantal virussen in Zanedeschia kan prima via serologische methoden als ELISA worden aangetoond; andere virussen alleen door middel van PCR. Voor sommige virussen in Zantedeschia waren bij de Bloembollenkeuringsdienst (BKD) en Praktijkonderzoek Plant en Omgeving (PPO-BBF) geen goede detectiemethoden aanwezig, of was bekend dat ze slecht met de bestaande toetsmethoden te detecteren zijn. Dit was een onbevredigende situatie, met name voor bedrijven die schoon uitgangsmateriaal willen uitleveren. Daarom heeft dit project als belangrijkste doel de kennis over virussen in Zantedeschia te vergroten en het pakket aan toetsmogelijkheden compleet te maken. De ELISA- en PCR-toetsen zijn binnen dit project gevalideerd met praktijkmateriaal en het protocol voor het toetsen op uitgangsmateriaal is geëvalueerd

A comparison of mollusc diversity between the relatively pristine Marico River and the impacted Crocodile River, two major tributaries of the Limpopo River, South Africa

A study of the freshwater mollusc diversity was conducted at selected sites in the relatively pristine  Marico River and the impacted Crocodile River, the major tributaries of the Limpopo River. Four  surveys were conducted, two in an early (May 2013 and 2014) and two in a late (November 2013 and 2014) low-flow period. Semi-quantitative surveys were done by sampling the vegetation, as well as the substratum, with a standard SASS net for approximately 15 min each. Environmental parameters including water temperature, electrical conductivity (EC) and pH were measured at each site. Molluscs were identified up to species level, sorted, counted, and the presence of juvenile specimens recorded. Historical data for the 1/16th degree square grids (loci), in which each of the sampling sites of the current study was located, were extracted from the National Freshwater Snail Collection at the Unit for Environmental Sciences and Management, Potchefstroom Campus of the North-West University. During this study, 20 and 9 species were recovered from the Marico and Crocodile Rivers, respectively, as compared to 13 and 12 species on record for these loci, respectively. Juvenile specimens were present during the four surveys at most of the sites. Canonical correspondence analyses were applied which revealed that biotopes, water temperature and EC played the most significant role in the distribution and abundance of species. The relatively high mollusc diversity and the fact that juveniles were present throughout the study, demonstrated that current habitat and environmental conditions were suitable to promote recruitment and the sustainability of diverse mollusc populations in the Marico River and its tributaries. However, in contrast to this, the exploitation of and habitat transformation in the Crocodile River has resulted in the decrease of biotopes which eventually could have led to the  decrease in diversity and the establishment of P. acuta, an exotic invader species.Keywords: freshwater molluscs, biodiversity, Marico River, Crocodile River, environmental variable

Gain of 20q11.21 in human pluripotent stem cells impairs TGF-β-dependent neuroectodermal commitment

Gain of 20q11.21 is one of the most common recurrent genomic aberrations in human pluripotent stem cells. Although it is known that overexpression of the antiapoptotic gene Bcl-xL confers a survival advantage to the abnormal cells, their differentiation capacity has not been fully investigated. RNA sequencing of mutant and control hESC lines, and a line transgenically overexpressing Bcl-xL, shows that overexpression of Bcl-xL is sufficient to cause most transcriptional changes induced by the gain of 20q11.21. Moreover, the differentially expressed genes in mutant and Bcl-xL overexpressing lines are enriched for genes involved in TGF-beta- and SMAD-mediated signaling, and neuron differentiation. Finally, we show that this altered signaling has a dramatic negative effect on neuroectodermal differentiation, while the cells maintain their ability to differentiate to mesendoderm derivatives. These findings stress the importance of thorough genetic testing of the lines before their use in research or the clinic

Texture and mineralogy influence on durability: The Macigno sandstone

The behaviour of ornamental stones in response to environmental changes or interactions is crucial when dealing with the conservation of cultural heritage.Weathering factors affect each rock differently, depending on structure, mineralogy, and extraction and implementation techniques. This work focuses on the Macigno sandstone, a dimension stone often employed in Tuscany over the centuries. A thorough mineralogical (optical microscopy, scanning electron microscopy and X-ray powder diffraction) and petrophysical characterization (i.e. mercury intrusion porosimetry, X-ray computed tomography, hygroscopic adsorption behaviour, ultrasounds, image analysis and capillary uptake) was made of the sandstone type extracted in the area of Greve in Chianti. The lithotype shows mineralogical (i.e. presence of mixed-layer phyllosilicates) and microporosimetric features, leading to a high susceptibility to relative humidity variation. Moreover, the influence of swelling minerals is related to weathering due to saline solution. The joint application of petrographic and petrophysical techniques allows an understanding of the characteristic weathering pattern of exfoliation (i.e. detachment of multiple thin stone layers, centimetre scale, that are sub-parallel to the stone surface)

Qualitative evaluation of a physical activity-based chronic disease prevention program in a low-income, rural South African setting

Introduction: Chronic diseases, an increasing global concern, are prevalent in the low-income communities of South Africa, where rural health systems bear the double burden of infectious and chronic diseases. The Discovery Healthy Lifestyle Programme (DHLP) is a physical activity-based chronic disease prevention program that has been implemented in a low-income, rural setting in South Africa. The DHLP consists of both school- and primary healthcare clinic-based interventions for learners (Healthnutz) and adults (Live it Up), facilitated by teachers, nurses and community volunteers. The aim of this evaluation was to qualitatively assess the process by which the DHLP was implemented, identifying enabling factors and barriers. Methods: Data were collected in target communities at schools and clinics from semi-structured focus groups of program leaders and members, teachers and community members (n=45), situational analyses of the school physical activity environment, informal community observations and informal interviews with program coordinators. Results: The target communities faced socioeconomic and health inequalities and remained under-resourced and under-served. In spite of these and other challenges, the DHLP was well received by community members and stakeholders. It was valued by respondents for its health and psychosocial outcomes, evidenced by increased knowledge and awareness of the importance of physical activity and healthy lifestyles, and positively altered perceptions of physical activity. Program implementers believed the Live it Up component was growing, and this suggested the sustainability of the program. There were, however, some concerns about the fidelity of the Healthnutz intervention, due to timetabling difficulties. Despite this, teachers were positive about the program and its value for their learners, staff and school. The community characteristics of being under-resourced and underserved appeared to positively influence DHLP implementation. Local government involvement in the DHLP resulted in greater ownership of the program, which enabled successful implementation. Conclusions: This study presents a unique opportunity to assess the implementation and sustainability requirements of programs in environments of limited resources, considerable burden of infectious and chronic diseases and extensive socioeconomic challenges. The findings suggest that through enhancement of knowledge, transfer of appropriate skills and the provision of an enabling environment, participation in physical activity can be effectively promoted in a low-income, rural setting. Physical activity interventions that promote the participation and empowerment of rural communities can be feasible and accessible, thereby assisting in addressing the growing burden of chronic diseases in low-income

Evaluation of a school-based physical activity intervention in Alexandra Township

Objectives. Non-communicable diseases and limited participation in school physical education have become increasing concerns in South Africa. In response to these concerns, a schoolbased physical activity intervention, Healthnutz, was implemented in three primary schools in Alexandra Township, Johannesburg. Evaluation of Healthnutz included assessing its feasibility and acceptability, and short-term changes in learners’ physical fitness, knowledge and attitudes. Methods. To assess feasibility and acceptability, a situational analysis and focus groups with teachers and programme monitors were conducted. Pre-post fitness testing (3-month interval) was conducted with learners, and a questionnaire assessed changes in learners’ knowledge, attitudes, self-efficacy, and perceived barriers to physical activity, in control and intervention schools. Results. At implementation, teachers identified the need for more physical activity in the school environment and were positive about Healthnutz. Follow-up focus group discussions suggested that it was positively impacting teachers, learners and the school in general. Scores for sit and reach (p<0.001), sit ups (p<0.02) and shuttle run (p<0.0001) improved significantly in intervention but not control schools. A significant decrease was observed in learners’ perceived external barriers to physical activity (p<0.0001) along with a positive change in learners’ self-efficacy for physical activity (p<0.05). Conclusions. Healthnutz raised awareness of the importance of physical activity in intervention schools. Findings indicate that even limited exposure to a physical activity intervention can lead to a significant improvement in aspects of learners’ fitness, knowledge, attitudes and perceptions regarding physical activity. Furthermore, training and support of teachers needs to be nonjudgemental and empowering

Antimicrobial susceptibility of organisms causing community-acquired urinary tract infections in Gauteng Province, South Africa

Background. Patients with community-acquired urinary tract infections (UTIs) frequently present to healthcare facilities in South Africa (SA).Aim. To provide information on UTI aetiology and antimicrobial susceptibility of pathogens.Methods. We recruited women with UTI-related symptoms, who tested positive for .2 urine dipstick criteria (proteinuria, blood, leucocytes or nitrites) at 1 public and 5 private primary healthcare facilities in 2011. Demographic and clinical data were recorded and mid-stream urine (MSU) specimens were cultured. UTI pathogens were Gram-stained and identified to species level. Etest-based antimicrobial susceptibility testing was performed for amoxicillin/clavulanic acid, cefixime, cefuroxime,  ciprofloxacin, fosfomycin, levofloxacin, nitrofurantoin, norfloxacin and trimethoprim/sulphamethoxazole.Results. Of the 460 women recruited, 425 MSU samples were processed and 204 UTI pathogens were identified in 201 samples. Most pathogens were Gram-negative bacilli (GNB) (182; 89.2%) and 22 (10.8%) were Gram-positive cocci (GPC). Escherichia coli was the most frequent GNB (160; 79.6%), while Enterococcus faecalis was the predominant GPC (8; 4.0%). The UTI pathogens had similar susceptibility profiles for fosfomycin (95.5%; 95% confidence interval (CI) 92.6 - 98.4), the 3 fluoroquinolones (94.1%; 95% CI 90.8 - 97.4), nitrofurantoin (91.7%; 95% CI 87.8 - 95.6), cefuroxime (90.1%; 95% CI 86.0 - 94.3) and cefixime (88.2%; 95% CI 83.7 - 92.6). UTI pathogens were less susceptible to amoxicillin/clavulanic acid (82.8%; 95% CI 77.5 - 88.0) when compared with fluoroquinolones and fosfomycin. Trimethoprim/ sulphamethoxazole was the least efficacious antimicrobial agent (44.3% susceptible; 95% CI 37.4 - 51.2).Conclusion. This study provides relevant data for the empirical treatment of community-acquired UTIs in SA

Understanding the microstructure of mortars for cultural heritage using X-ray CT and MIP

In this study, the microstructure of mock-up mortar specimens for a historic environment, composed of different mixtures, was studied using mercury intrusion porosity (MIP) and micro-computed tomography (\ub5CT), highlighting the advantages and drawbacks of both techniques. Po-rosity, sphericity, and pores size distribution were studied, evaluating changes according to mortar composition (aerial and hydraulic binders, quartz sand, and crushed limestone aggregate). The \ub5CT results were rendered using 3D visualization software, which provides complementary information for the interpretation of the data obtained using 3D data-analysis software. Moreover, \ub5CT contrib-utes to the interpretation of MIP results of mortars. On the other hand, MIP showed significant ink-bottle effects in lime and cement mortars samples that should be taken into account when interpret-ing the results. Moreover, the MIP results highlighted how gypsum mortar samples display a porosity distribution that is best studied using this technique. This multi-analytical approach provides important insights into the interpretation of the porosimetric data obtained. This is crucial in the characterization of mortars and provides key information for the study of building materials and cultural heritage conservation