Linear splicing and syntactic monoid

AbstractSplicing systems were introduced by Head in 1987 as a formal counterpart of a biological mechanism of DNA recombination under the action of restriction and ligase enzymes. Despite the intensive studies on linear splicing systems, some elementary questions about their computational power are still open. In particular, in this paper we face the problem of characterizing the proper subclass of regular languages which are generated by finite (Paun) linear splicing systems. We introduce here the class of marker languages L, i.e., regular languages with the form L=L1[x]1L2, where L1,L2 are regular languages, [x] is a syntactic congruence class satisfying special conditions and [x]1 is either equal to [x] or equal to [x]∪{1}, 1 being the empty word. Using classical properties of formal language theory, we give an algorithm which allows us to decide whether a regular language is a marker language. Furthermore, for each marker language L we exhibit a finite Paun linear splicing system and we prove that this system generates L

Aestivation and hypoxia-related events share common silent neuron trafficking processes

10.1186/1471-2202-13-39BMC Neuroscience131-BNME

Molecular approaches in the diagnosis of sepsis in neutropenic patients with haematological malignances

Introduction. Sepsis is a major cause of significant morbidity and mortality in neutropenic patients. Blood culture remains the gold standard in the microbiological diagnosis of bacterial or fungal bloodstream infections, but it has clear limits of rapidity and sen- sitivity. The objective of the study was to compare the real-time polymerase chain reaction (RT-PCR) with automated blood cul- tures (BC) method in detection in whole blood of pathogens in febrile neutropenic patients with hematological malignancies. Methods. A total of 166 consecutive febrile neutropenic patients were enrolled. Blood samples for cultures and SeptiFast testing were obtained at the onset of fever, before the implementation of empirical antibiotic therapy. Results. Forty (24.1%) samples out of the 166 blood samples tested, were positive by at least one method. Twenty-three (13.9%) samples were positive by blood culture and 38 (22.9%) by multi- plex real-time PCR. The analysis of concordance evidenced a low correlation between the two methods (n = 21; 52.5%), mainly due to samples found negative by culture but positive with the Septi- Fast assay. Sensitivity, specificity, and positive and negative pre- dictive values of RT-PCR were 91.3%, 88.1%, 55.3%, and 98.4%, respectively, compared with BC. Discussion. Multiplex real-time PCR assay improved detection of the most bacteria associated with febrile neutropenia episodes. Fur- ther studies are needed to assess the real advantages and clinical benefits that molecular biology tests can add in diagnosis of sepsis. The full article is free available on www.jpmh.or

Effects of Mefepronic Acid (2-Phenoxy-2-Methyl Propionic Acid) on Hepatic Metabolism and Reproductive Parameters in Postpartum Dairy Cows.

This study investigates the effects of mefepronic acid (MA), a PPAR-α agonist, on hepatic metabolic functions and reproduction of postpartum dairy cows. Sixty Friesian cows were divided into Group A (administered 5g of MA IM, within 24 hrs after calving, on the 3rd and 5th day postpartum) and Group B (control). All the cows were blood sampled within 24 hrs of calving (Day 0), on Day 3, 5, 10, 15, 30, and 40 postpartum. On plasma, metabolic and biochemical parameters were determined. Liver biopsies were performed on Day 0, 15 and 30 for the evaluation of hepatic lipid and glycogen content. Reproductive parameters were also evaluated. In Group A, blood HDL, glucose and cholesterol increased till the end of the study, in accordance with the histological results. PPAR-α immunopositive cells increased in liver slices of Group A, too. Reproductive parameters improved in Group A. This study highlights the beneficial effects of mefepronic acid on the hepatic metabolism and reproductive parameters of post-partum dairy cows

HIV infection and frequency of micronucleus in human peripheral blood cells

Purpose. People living with HIV have higher rates of malignancies than the general population in the era of active antiretroviral therapy (ART). Genotoxic effects of HIV infection and/or ART that can induce neoplastic development are not yet well known. A prospective cohort study to investigate DNA damage measured through the micronuclei (MN) frequency in HIV-patients has been performed. Methods. Peripheral blood mononuclear cells (PBMC) were isolated from 52 HIV-patients treated with ART and 55 healthy controls. Results. By the comparison of MN frequency, a significant difference between HIV-patients (15.5 ± 9.8) and controls (6.0 ± 3.6) (p < 0.001) has been revealed. In univariate linear regression analysis, HCV infection (r = 0.31; p < 0.001), HIV-RNA (r = 0.29; p < 0.03) and duration of infection (r = - 0.16; p < 0.25) were associated with MN frequency; while only viral load (VL) significantly correlates (r = 0.29; p < 0.05) in a multiple regression model. Conclusions. The association of VL with MN frequency supports a genotoxic effect of HIV infection

An Outlook on Uterine Neoplasms: From Hormonal and DNA Damaging to Cervical and Endometrial Cancer Development and Minimally Invasive Management.

Uterine neoplasms are common tumors, formed by endometrial and cervical cancers; endometrial cancer is the fourth most frequently diagnosed cancer in developed countries and the eighth leading cause of cancer death in women, and cervical cancer is the second most common cancer in women worldwide and is a leading cause of cancer-related death in women in underdeveloped countries. Cervical cancer arises by HPV DNA damaging; in fact cervical cancer starts in the cells on the surface of the cervix, exposed to viral infective agents, as HPV, founded in 80% of patients affected by cervical cancer. Thus, more than 99% of cervical uterine cancer cases show HPV presence. Nevertheless, Endometrial cancer involves cancerous growth of the endometrium, and increasing evidence indicates that different biological and genetic factors play relevant roles its onset so as carcinogenesis generally develops by hormonal modifications. Both tumors can be safely and feasibly managed from minimally invasive surgical techniques till to endoscopic radical operations, such as hysterectomy, bilateral salpingo- oophorectomy, pelvic and para-aortic lymphadenectomy for surgical treatment. The authors reviewed several excellent reviews and studies in the area of hormonal, viral and genetical risk factors associated with endometrial and cervical cancer risk and development, analyzing the area of biologic markers, all papers dealing with serum and plasma markers involved in uterine cancer detection, development, progression and minimally invasive treatment

Caring for a dying spouse at the end of life: 'It's one of the things you volunteer for when you get married': a qualitative study of the oldest carers' experiences.

older people aged 80 and over are increasingly providing end-of-life care to spouses at home and often do so for long periods of time, while also trying to manage their own illnesses and disabilities. Little of the research on older spousal carers has focussed on the oldest carers; hence, the needs of this particular population are not fully known.to explore the experiences of the 'oldest carers' in caring for a dying spouse at home.secondary analysis was undertaken on a subset of data from a larger qualitative interview study; this dataset comprised 17 interviews from participants aged 80 or over. Framework analysis methods were used, with items derived from the thematic analysis of the main study.the oldest carers in this subset demonstrated high levels of resilience and the ability to adapt to their caring role. Caring until death was accepted as an integral part of the commitment made to their partner as part of the 'wedding contract'. Carers felt they benefitted from the support provided by family, friends and care services; however, their own care needs were not always recognised by health and social care services.these findings underscore the complexity of the oldest carers' experiences and challenges in times of illness and end of life. Healthcare professionals should be alerted to the myriad ways caregiving is enacted in serious illness and seek opportunities for developing supportive interventions specifically for older carers