Construction and Analysis of Projected Deformed Products

We introduce a deformed product construction for simple polytopes in terms of lower-triangular block matrix representations. We further show how Gale duality can be employed for the construction and for the analysis of deformed products such that specified faces (e.g. all the k-faces) are ``strictly preserved'' under projection. Thus, starting from an arbitrary neighborly simplicial (d-2)-polytope Q on n-1 vertices we construct a deformed n-cube, whose projection to the last dcoordinates yields a neighborly cubical d-polytope. As an extension of thecubical case, we construct matrix representations of deformed products of(even) polygons (DPPs), which have a projection to d-space that retains the complete (\lfloor \tfrac{d}{2} \rfloor - 1)-skeleton. In both cases the combinatorial structure of the images under projection is completely determined by the neighborly polytope Q: Our analysis provides explicit combinatorial descriptions. This yields a multitude of combinatorially different neighborly cubical polytopes and DPPs. As a special case, we obtain simplified descriptions of the neighborly cubical polytopes of Joswig & Ziegler (2000) as well as of the ``projected deformed products of polygons'' that were announced by Ziegler (2004), a family of 4-polytopes whose ``fatness'' gets arbitrarily close to 9.Comment: 20 pages, 5 figure

Prodsimplicial-Neighborly Polytopes

Simultaneously generalizing both neighborly and neighborly cubical polytopes, we introduce PSN polytopes: their k-skeleton is combinatorially equivalent to that of a product of r simplices. We construct PSN polytopes by three different methods, the most versatile of which is an extension of Sanyal and Ziegler's "projecting deformed products" construction to products of arbitrary simple polytopes. For general r and k, the lowest dimension we achieve is 2k+r+1. Using topological obstructions similar to those introduced by Sanyal to bound the number of vertices of Minkowski sums, we show that this dimension is minimal if we additionally require that the PSN polytope is obtained as a projection of a polytope that is combinatorially equivalent to the product of r simplices, when the dimensions of these simplices are all large compared to k.Comment: 28 pages, 9 figures; minor correction

The CONEstrip algorithm

Uncertainty models such as sets of desirable gambles and (conditional) lower previsions can be represented as convex cones. Checking the consistency of and drawing inferences from such models requires solving feasibility and optimization problems. We consider finitely generated such models. For closed cones, we can use linear programming; for conditional lower prevision-based cones, there is an efficient algorithm using an iteration of linear programs. We present an efficient algorithm for general cones that also uses an iteration of linear programs

Quantum Computing with NMR

A review of progress in NMR quantum computing and a brief survey of the literatureComment: Commissioned by Progress in NMR Spectroscopy (95 pages, no figures

Algorithms for Highly Symmetric Linear and Integer Programs

This paper deals with exploiting symmetry for solving linear and integer programming problems. Basic properties of linear representations of finite groups can be used to reduce symmetric linear programming to solving linear programs of lower dimension. Combining this approach with knowledge of the geometry of feasible integer solutions yields an algorithm for solving highly symmetric integer linear programs which only takes time which is linear in the number of constraints and quadratic in the dimension.Comment: 21 pages, 1 figure; some references and further comments added, title slightly change

Five-Torsion in the Homology of the Matching Complex on 14 Vertices

J. L. Andersen proved that there is 5-torsion in the bottom nonvanishing homology group of the simplicial complex of graphs of degree at most two on seven vertices. We use this result to demonstrate that there is 5-torsion also in the bottom nonvanishing homology group of the matching complex $M_{14}$ on 14 vertices. Combining our observation with results due to Bouc and to Shareshian and Wachs, we conclude that the case $n=14$ is exceptional; for all other $n$, the torsion subgroup of the bottom nonvanishing homology group has exponent three or is zero. The possibility remains that there is other torsion than 3-torsion in higher-degree homology groups of $M_n$ when $n \ge 13$ and $n \neq 14$.Comment: 11 page

Complementary vertices and adjacency testing in polytopes

Our main theoretical result is that, if a simple polytope has a pair of complementary vertices (i.e., two vertices with no facets in common), then it has at least two such pairs, which can be chosen to be disjoint. Using this result, we improve adjacency testing for vertices in both simple and non-simple polytopes: given a polytope in the standard form {x \in R^n | Ax = b and x \geq 0} and a list of its V vertices, we describe an O(n) test to identify whether any two given vertices are adjacent. For simple polytopes this test is perfect; for non-simple polytopes it may be indeterminate, and instead acts as a filter to identify non-adjacent pairs. Our test requires an O(n^2 V + n V^2) precomputation, which is acceptable in settings such as all-pairs adjacency testing. These results improve upon the more general O(nV) combinatorial and O(n^3) algebraic adjacency tests from the literature.Comment: 14 pages, 5 figures. v1: published in COCOON 2012. v2: full journal version, which strengthens and extends the results in Section 2 (see p1 of the paper for details

Exponents of 2-multiarrangements and multiplicity lattices

We introduce a concept of multiplicity lattices of 2-multiarrangements, determine the combinatorics and geometry of that lattice, and give a criterion and method to construct a basis for derivation modules effectively.Comment: 14 page

On the existence of star products on quotient spaces of linear Hamiltonian torus actions

We discuss BFV deformation quantization of singular symplectic quotient spaces in the special case of linear Hamiltonian torus actions. In particular, we show that the Koszul complex on the moment map of an effective linear Hamiltonian torus action is acyclic. We rephrase the nonpositivity condition of Arms, Gotay and Jennings for linear Hamiltonian torus actions. It follows that reduced spaces of such actions admit continuous star products.Comment: 9 pages, 4 figures, uses psfra

Proto-Plasm: parallel language for adaptive and scalable modelling of biosystems

This paper discusses the design goals and the first developments of Proto-Plasm, a novel computational environment to produce libraries of executable, combinable and customizable computer models of natural and synthetic biosystems, aiming to provide a supporting framework for predictive understanding of structure and behaviour through multiscale geometric modelling and multiphysics simulations. Admittedly, the Proto-Plasm platform is still in its infancy. Its computational framework—language, model library, integrated development environment and parallel engine—intends to provide patient-specific computational modelling and simulation of organs and biosystem, exploiting novel functionalities resulting from the symbolic combination of parametrized models of parts at various scales. Proto-Plasm may define the model equations, but it is currently focused on the symbolic description of model geometry and on the parallel support of simulations. Conversely, CellML and SBML could be viewed as defining the behavioural functions (the model equations) to be used within a Proto-Plasm program. Here we exemplify the basic functionalities of Proto-Plasm, by constructing a schematic heart model. We also discuss multiscale issues with reference to the geometric and physical modelling of neuromuscular junctions