Representation Learning with Ordered Relation Paths for Knowledge Graph Completion

Incompleteness is a common problem for existing knowledge graphs (KGs), and the completion of KG which aims to predict links between entities is challenging. Most existing KG completion methods only consider the direct relation between nodes and ignore the relation paths which contain useful information for link prediction. Recently, a few methods take relation paths into consideration but pay less attention to the order of relations in paths which is important for reasoning. In addition, these path-based models always ignore nonlinear contributions of path features for link prediction. To solve these problems, we propose a novel KG completion method named OPTransE. Instead of embedding both entities of a relation into the same latent space as in previous methods, we project the head entity and the tail entity of each relation into different spaces to guarantee the order of relations in the path. Meanwhile, we adopt a pooling strategy to extract nonlinear and complex features of different paths to further improve the performance of link prediction. Experimental results on two benchmark datasets show that the proposed model OPTransE performs better than state-of-the-art methods

A novel signature of aging-related genes associated with lymphatic metastasis for survival prediction in patients with bladder cancer

BackgroundThe predominant and most prevalent form of metastatic bladder cancer (BCa) is lymphatic metastasis, which is associated with a highly dismal prognosis for patients. Aging-related genes (ARGs) are believed to contribute significantly to tumor development. However, the effect of ARGs on lymphatic metastasis of BCa is unclear. This research sought to establish a prognosis model based on ARGs associated with lymphatic metastasis in BCa.MethodsWe downloaded BCa data from the TCGA and GEO databases and ARGs from the Aging Atlas database. The least absolute shrinkage and selection operator (LASSO) approach was applied to obtain the characteristic ARGs of risk signature in the TCGA cohort. Verification was done using the GSE13507 dataset. The R package ‘ConsensusClusterPlus’ was employed to identify the molecular subtypes based on the characteristic ARGs. Protein-Protein interaction network, MCODE analysis, enrichment analysis (KEGG, GO, GSEA), and immune infiltration analysis were performed to investigate underlying mechanisms. EdU, migration and invasion assays, wound healing assays, immunofluorescence staining, and quantitative polymerase chain reaction were conducted to evaluate the impact of ELN on the proliferative, migratory, and invasive capacities of BCa cells.ResultsWe identified 20 differently expressed ARGs. A four ARGs risk signature (EFEMP1, UCHL1, TP63, ELN) was constructed in the TCGA cohort. The high-risk group (category) recorded a reduced overall survival (OS) rate relative to the low-risk category (hazard ratio, 2.15; P <0.001). The risk score could predict lymphatic metastasis in TCGA cohort (AUC=0.67). The GSE13507 dataset was employed to verify the validity of this risk score. Based on the four ARGs, two distinct aging profiles (Cluster 1 and Cluster 2) were discovered utilizing the ConsensusClusterPlus, and Cluster 2 possessed a favorable OS in contrast with Cluster 1 (hazard ratio, 0.69; P =0.02). Classical tumor signaling pathways, ECM-associated signaling pathways, and immune-related signaling pathways participate in BCa progression. ELN recombinant protein affected the expression of collagen and increased migration and invasiveness in BCa cells.ConclusionWe constructed a four-ARG risk signature and identified two aging molecular subtypes. This signature could serve as an effective survival predictor for patients with BCa

Formation Mechanism of Laser-Driven Magnetized "Pillars of Creation"

Pillars of Creation, one of the most recognized objects in the sky, are believed to be associated with the formation of young stars. However, so far, the formation and maintenance mechanism for the pillars are still not fully understood due to the complexity of the nonlinear radiation magneto-hydrodynamics (RMHD). Here, assuming laboratory laser-driven conditions, we studied the self-consistent dynamics of pillar structures in magnetic fields by means of two-dimensional (2D) and three-dimensional (3D) RMHD simulations, and these results also support our proposed experimental scheme. We find only when the magnetic pressure and ablation pressure are comparable, the magnetic field can significantly alter the plasma hydrodynamics. For medium magnetized cases ($\beta_{initial} \approx 3.5$), {the initial magnetic fields undergo compression and amplification. This amplification results in the magnetic pressure inside the pillar becoming large enough to support the sides of the pillar against radial collapse due to pressure from the surrounding hot plasma. This effect is particularly pronounced for the parallel component ($B_y$), which is consistent with observational results.} In contrast, a strong perpendicular ($B_x, B_z$) magnetic field ($\beta_{initial} < 1$) almost remains its initial distribution and significantly suppresses the expansion of blow-off gas plasma, leading to the inability to form pillar-like structures. The 3D simulations suggest that the bending at the head of `Column \uppercase\expandafter{\romannumeral1}' in pillars of creation may be due to the non-parallel magnetic fields. After similarity scaling transformation, our results can be applied to explain the formation and maintenance mechanism of the pillars, and can also provide useful information for future experimental designs

Associations of B Vitamin-Related Dietary Pattern during Pregnancy with Birth Outcomes: A Population-Based Study in Northwest China

This study aimed to derive a maternal dietary pattern to explain the variation in B vitamins during pregnancy and to investigate this pattern in relation to birth outcomes. A total of 7347 women who gave birth to live newborns less than one year were included. Their dietary pattern during pregnancy was derived using the reduced-rank regression method with six B vitamins as response variables. Associations between dietary pattern score and birth weight, gestational age at delivery, birth weight Z score, low birth weight, preterm, and small-for-gestational-age (SGA) were estimated using generalised linear mixed models. We identified a high B-vitamin dietary pattern characterised by high intakes of animal foods, vegetables, fungi and algae, legumes, and low intakes of oils and cereals. Women in the highest quartile of this pattern score had newborns with a 44.5 g (95% CI: 13.8, 75.2 g) higher birth weight, 0.101 (95% CI: 0.029, 0.172) higher birth weight Z score, and 27.2% (OR: 0.728; 95% CI: 0.582, 0.910) lower risk of SGA than those in the lowest quartile. Our study suggested that adherence to the high B-vitamin dietary pattern during pregnancy was associated with a higher birth weight and a lower risk of SGA

ICDP workshop on scientific drilling of Nam Co on the Tibetan Plateau: 1 million years of paleoenvironmental history, geomicrobiology, tectonics and paleomagnetism derived from sediments of a high-altitude lake

The Tibetan Plateau is of peculiar societal relevance as it provides freshwater from the so-called “Water Tower of Asia” to a large portion of the Asian population. However, future climate change will affect the hydrological cycle in this area. To define parameters for future climate change scenarios it is necessary to improve the knowledge about thresholds, timing, pace and intensity of past climatic changes and associated environmental impacts. Sedimentary archives reaching far back in time and spanning several glacial–interglacial cycles such as Nam Co provide the unique possibility to extract such information. In order to explore the scientific opportunities that an ICDP drilling effort at Nam Co would provide, 40 scientists from 13 countries representing various scientific disciplines met in Beijing from 22 to 24 May 2018. Besides paleoclimatic investigations, opportunities for paleomagnetic, deep biosphere, tectonic and paleobiological studies were discussed. After having explored the technical and logistical challenges and the scientific opportunities all participants agreed on the great value and need to drill this extraordinary archive, which has a sediment thickness of more than 1 km, likely covering more than 1 Ma