Momentum transferred to a trapped Bose-Einstein condensate by stimulated light scattering

The response of a trapped Bose-Einstein condensed gas to a density perturbation generated by a two-photon Bragg pulse is investigated by solving the time-dependent Gross-Pitaevskii equation. We calculate the total momentum imparted to the condensate as a function of both the time duration of the pulse and the frequency difference of the two laser beams. The role of the dynamic response function in characterizing the time evolution of the system is pointed out, with special emphasis to the phonon regime. Numerical simulations are compared with the predictions of local density approximation. The relevance of our results for the interpretation of current experiments is also discussed.Comment: 7 pages, 3 postscript figure

Computer-assisted placement technique in hip resurfacing arthroplasty: improvement in accuracy?

Freehand positioning of the femoral drill guide is difficult during hip resurfacing and the surgeon is often unsure of the implant position achieved peroperatively. The purpose of this study was to find out whether, by using a navigation system, acetabular and femoral component positioning could be made easier and more precise. Eighteen patients operated on by the same surgeon were matched by sex, age, BMI, diagnosis and ASA score (nine patients with computer assistance, nine with the regular ancillary). Pre-operative planning was done on standard AP and axial radiographs with CT scan views for the computer-assisted operations. The final position of implants was evaluated by the same radiographs for all patients. The follow-up was at least 1year. No difference between both groups in terms of femoral component position was observed (p > 0.05). There was also no difference in femoral notching. A trend for a better cup position was observed for the navigated hips, especially for cup anteversion. There was no additional operating time for the navigated hips. Hip navigation for resurfacing surgery may allow improved visualisation and hip implant positioning, but its advantage probably will be more obvious with mini-incisions than with regular incision surger

The Binding Pocket at the Interface of Multimeric Telomere G-quadruplexes: Myth or Reality?

Human telomeric DNA with hundreds of repeats of the 5’-TTAGGG-3’ motif plays a crucial role in several biological processes. It folds into G-quadruplex (G4) structures and features a pocket at the interface of two contiguous G4 blocks. Up to now no structural NMR and crystallographic data are available for ligands interacting with contiguous G4s. Naphthalene diimide monomers and dyads were investigated as ligands of a dimeric G4 of human telomeric DNA comparing the results with those of the model monomeric G4. Time-resolved fluorescence, circular dichroism, isothermal titration calorimetry and molecular modeling were used to elucidate binding features. Ligand fluorescence lifetime and induced circular dichroism unveiled occupancy of the binding site at the interface. Thermodynamic parameters confirmed the hypothesis as they remarkably change for the dyad complexes of the monomeric and dimeric telomeric G4. The bi-functional ligand structure of the dyads is a fundamental requisite for binding at the G4 interface as only the dyads engage in complexes with 1 : 1 stoichiometry, lodging in the pocket at the interface and establishing multiple interactions with the DNA skeleton. In the absence of NMR and crystallographic data, our study affords important proofs of binding at the interface pocket and clues on the role played by the ligand structure

In-vivo diffusing-wave-spectroscopy measurements of the ocular fundus

We present what is to our knowledge the first observation of a diffusing-wave-spectroscopy signal recorded in-vivo on the ocular fundus. A modified ophthalmic microscope was developed which can acquire diffusing-wave-spectroscopy signal from the eye fundus. The diffusing-wave-spectroscopy signal was recorded in-vivo on a rabbit eye during transpupillary thermotherapy. Experimental results show the ability of the system to detect motion of the scattering sites in the ocular fundus layers during laser thermal heating. (c) 2007 Optical Society of America

Kinetic theory and dynamic structure factor of a condensate in the random phase approximation

We present the microscopic kinetic theory of a homogeneous dilute Bose condensed gas in the generalized random phase approximation (GRPA), which satisfies the following requirements: 1) the mass, momentum and energy conservation laws; 2) the H-theorem; 3) the superfluidity property and 4) the recovery of the Bogoliubov theory at zero temperature \cite{condenson}. In this approach, the condensate influences the binary collisional process between the two normal atoms, in the sense that their interaction force results from the mediation of a Bogoliubov collective excitation traveling throughout the condensate. Furthermore, as long as the Bose gas is stable, no collision happens between condensed and normal atoms. In this paper, we show how the kinetic theory in the GRPA allows to calculate the dynamic structure factor at finite temperature and when the normal and superfluid are in a relative motion. The obtained spectrum for this factor provides a prediction which, compared to the experimental results, allows to validate the GRPA. PACS numbers:03.75.Hh, 03.75.Kk, 05.30.-dComment: 6 pages, 1 figures, QFS2004 conferenc

An acetylation-mono-ubiquitination switch on lysine 120 of H2B.

Post-translational modifications (PTMs) of histones are crucial for transcriptional control, defining positive and negative chromatin territories. A switch of opposing functional significance between acetylation and methylation occurs on many residues. Lysine 120 of H2B is modified by two PTMs: ubiquitination, which is required for further trans-tail H3 methylations and elongation, and acetylation, whose role is less clear. ChIP-Seq with MNase I-treated chromatin indicates that H2BK120ac is present on nucleosomes immediately surrounding the TSS of transcribed or poised units, but not in core promoters. In kinetic ChIP analysis of ER-stress inducible genes, H2BK120ac precedes activation and H2B-ub deposition. Using in vitro acetylation assays, pharmacologic inhibition and RNAi, we established that KAT3 is responsible for H2BK120ac. Interestingly, the global levels of H2B-ub decreased in KAT3-inactivated cells. However, RNF20 recruitment was not impaired by KAT3-inactivation. Our data point at acetylation of Lysine 120 of H2B as an early mark of poised or active state and establish a temporal sequence between acetylation and mono-ubiquitination of this H2B residue

rCASC implementation in Laniakea: porting containerization-based-reproducibility to a cloud Galaxy on-demand platform

Integrating rCASC in Laniakea: rCASC, Cluster Analysis of Single Cells [Alessandri et al. BioRxiv], is part of the reproducible-bioinformatics.org project and provides single cell analysis functionalities within the reproducible rules described by Sandve et al. [PLoS Comp Biol. 2013]. Laniakea [Tangaro et al. BioRxiv Bioinformatics] provides the possibility to automate the creation of Galaxy-based virtualized environments through an easy setup procedure, providing an on-demand workspace ready to be used by life scientists and bioinformaticians. The final goal is to offer rCASC as a Galaxy flavor in the Laniakea Galaxy on-demand environment