Amino-acid-dependent main-chain torsion-energy terms for protein systems

Many commonly used force fields for protein systems such as AMBER, CHARMM, GROMACS, OPLS, and ECEPP have amino-acid-independent force-field parameters of main-chain torsion-energy terms. Here, we propose a new type of amino-acid-dependent torsion-energy terms in the force fields. As an example, we applied this approach to AMBER ff03 force field and determined new amino-acid-dependent parameters for $\psi$ and $\psi'$ angles for each amino acid by using our optimization method, which is one of the knowledge-based approach. In order to test the validity of the new force-field parameters, we then performed folding simulations of $\alpha$-helical and $\beta$-hairpin peptides, using the optimized force field. The results showed that the new force-field parameters gave structures more consistent with the experimental implications than the original AMBER ff03 force field.Comment: 10 pages, (Revtex4.1), 3 tables, 6 figure

Determination of Electrical Parameters for Skin during Galvanic Skin Reflex from Continuous Measurement

Skin impedance satisfies the Cole-Cole arc's law. The change of skin impedance during GSR (Galvanic Skin Reflex) can be expressed by the change of equivalent parallel resistance approximately. Using these characteristics, the complicated change of skin impedance during GSR can be determined continuously from the measurement value in one frequency point

Charge Order in a Two-Dimensional Kondo Lattice Model

The possibility of charge order is theoretically examined for the Kondo lattice model in two dimensions, which does not include bare repulsive interactions. Using two complementary numerical methods, we find that charge order appears at quarter filling in an intermediate Kondo coupling region. The charge ordered ground state is an insulator exhibiting an antiferromagnetic order at charge-poor sites, while the paramagnetic charge-ordered state at finite temperatures is metallic with pseudogap behavior. We confirm that the stability of charge order is closely related with the local Kondo-singlet formation at charge-rich sites. Our results settle the controversy on charge order in the Kondo lattice model in realistic spatial dimensions.Comment: 5 pages, 4 figure

Measurement of Emotional Response by Similarity in Patterns of Galvanic Skin Reflex

There is no doubt that many people feel the peace of mind or the pleasures of senses in appreciating music. But the estimation of the effect is very difficult and the objective estimation can be hardly done. This study proposed the objective estimating method of human emotion utilizing galvanic skin reflex (GSR) which reflects a human psychological activity. In this method, not by individual response, but by the series of response and pattern of appearance of GSR, the emotional response under appreciating music was investigated. In the case of appreciation of the same classic music to several subjects, the individual GSR responses are random and remarkable characteristic could not be find on the results. However, on the patterns of appearance of GSR, the patterns obtaining from the same generation are much similar each other and the patterns obtaining from different generation are less similar. It was cleared that the same music gave different effect on different generations

Parameters for Analysis on Distributed Circuit Properties of Etched Alunimum Oxide Film

The distributed circuit properties based on pores in the etched aluminum oxide film of the electrolytic capacitor have been analysed by the mathematical equation. This paper proposes the selection and the determining method of the parameters appearing in the analysis

A venous occlusion plethysmography using a load cell as the sensing element

An application of the load cell as a sensor in venous occlusion plethysmography is presented. In this method the limb volume changes that follow venous occlusion are converted into water volume changes using a water tank for volume change detection. The hydrostatic pressure, as well as the water surface level, is measured and used for the calculation of the volume change. By using this method the influence of water pressure on limb blood flow, as well as drift and leakage of the sensing element, is avoided. The load cell has the advantage of measuring the weight of the displaced water volume, which simplifies the design principles of the plethysmography. The plethysmography is found to be sensitive, highly linear, and easy to handle. It has been evaluated in several subjects, and the results of these studies are in agreement with earlier results </p

THE FLAMMENTOD OF HERAKLES IN SOPHOKLES' TRACHINIAI

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