Topological Floquet edge states in periodically curved waveguides

We study the Floquet edge states in arrays of periodically curved optical waveguides described by the modulated Su-Schrieffer-Heeger model. Beyond the bulk-edge correspondence, our study explores the interplay between band topology and periodic modulations. By analysing the quasi-energy spectra and Zak phase, we reveal that, although topological and non-topological edge states can exist for the same parameters, \emph{they can not appear in the same spectral gap}. In the high-frequency limit, we find analytically all boundaries between the different phases and study the coexistence of topological and non-topological edge states. In contrast to unmodulated systems, the edge states appear due to either band topology or modulation-induced defects. This means that periodic modulations may not only tune the parametric regions with nontrivial topology, but may also support novel edge states.Comment: 11 pages, 5 figure

Trophic level drives the host microbiome of soil invertebrates at a continental scale

Background: Increasing our knowledge of soil biodiversity is fundamental to forecast changes in ecosystem functions under global change scenarios. All multicellular organisms are now known to be holobionts, containing large assemblages of microbial species. Soil fauna is now known to have thousands of species living within them. However, we know very little about the identity and function of host microbiome in contrasting soil faunal groups, across different terrestrial biomes, or at a large spatial scale. Here, we examined the microbiomes of multiple functionally important soil fauna in contrasting terrestrial ecosystems across China. Results: Different soil fauna had diverse and unique microbiomes, which were also distinct from those in surrounding soils. These unique microbiomes were maintained within taxa across diverse sampling sites and in contrasting terrestrial ecosystems. The microbiomes of nematodes, potworms, and earthworms were more difficult to predict using environmental data, compared to those of collembolans, oribatid mites, and predatory mites. Although stochastic processes were important, deterministic processes, such as host selection, also contributed to the assembly of unique microbiota in each taxon of soil fauna. Microbial biodiversity, unique microbial taxa, and microbial dark matter (defined as unidentified microbial taxa) all increased with trophic levels within the soil food web. Conclusions: Our findings demonstrate that soil animals are important as repositories of microbial biodiversity, and those at the top of the food web harbor more diverse and unique microbiomes. This hidden source of biodiversity is rarely considered in biodiversity and conservation debates and stresses the importance of preserving key soil invertebrates

Floquet-surface bound states in the continuum in a resonantly driven 1D tilted defect-free lattice

We study the Floquet-surface bound states embedded in the continuum (BICs) and bound states out the continuum (BOCs)in a resonantly driven 1D tilted defect-free lattice. In contrast to fragile single-particle BICs assisted by specially tailored potentials, we find that Floquet-surface BICs, stable against structural perturbations, can exist in a wide range of parameter space. By using a multiple-time-scale asymptotic analysis in the high-frequency limit, the appearance of Floquet-surface bound states can be analytically explained by effective Tamm-type defects at boundaries induced by the resonance between the periodic driving and tilt. The phase boundary of existing Floquet-surface states is also analytically given. Based on the repulsion effect of surface states, we propose to detect transition points and measure the number of Floquet-surface bound states by quantum walk. Our work opens a new door to experimental realization of BICs in quantum system.Comment: 8 pages, 4 figures. submitted to Phys.Rev.

QMEC : a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

Microorganisms are major drivers of elemental cycling in the biosphere. Determining the abundance of microbial functional traits involved in the transformation of nutrients, including carbon (C), nitrogen (N), phosphorus (P) and sulfur (S), is critical for assessing microbial functionality in elemental cycling. We developed a high-throughput quantitative-PCR-based chip, Quantitative microbial element cycling (QMEC), for assessing and quantifying the genetic potential of microbiota to mineralize soil organic matter and to release C, N, P and S. QMEC contains 72 primer pairs targeting 64 microbial functional genes for C, N, P, S and methane metabolism. These primer pairs were characterized by high coverage (average of 18-20 phyla covered per gene) and sufficient specificity (>70% match rate) with a relatively low detection limit (7-102 copies per run). QMEC was successfully applied to soil and sediment samples, identifying significantly different structures, abundances and diversities of the functional genes (P<0.05). QMEC was also able to determine absolute gene abundance. QMEC enabled the simultaneous qualitative and quantitative determination of 72 genes from 72 samples in one run, which is promising for comprehensively investigating microbially mediated ecological processes and biogeochemical cycles in various environmental contexts including those of the current global change

Modulation-induced long-range magnon bound states in one-dimensional optical lattices

Magnon excitations play an important role in understanding quantum magnetism and magnon bound states observed with ultracold atoms in optical lattices. Here, we investigate how gradient magnetic field and periodically modulated spin-exchange strength affect the two-magnon excitations. In the Stark resonance where the driving frequency matches and smooths the potential bias, the system gains translational invariance in both space and time in the rotating frame, and thus we can develop a Floquet-Bloch band theory for two magnons. We find a new kind of bound states with relative distance no less than two sites, apart from the conventional bound states with relative distance at one site, which indicates the modulation-induced long-range interaction. We analytically derive an effective Hamiltonian via the many-body perturbation theory for a deeper understanding of such novel bound states and explore the interplay between these two types of bound states. Moreover, we propose to probe modulation-induced bound states via quantum walks. Our study not only provides a scheme to form long-range magnon bound states, but also lays a cornerstone for engineering exotic quantum states in multi-particle Floquet systems.This work is supported by the Key-Area Research and Development Program of GuangDong Province under Grants No. 2019B030330001, the National Natural Science Foundation of China (NNSFC) under Grants [No. 11874434, No. 11574405], and the Science and Technology Program of Guangzhou (China) under Grants No. 201904020024. YK is partially supported by the Office of China Postdoctoral Council (Grant No. 20180052), the National Natural Science Foundation of China (Grant No. 11904419), and the Australian Research Council (DP200101168)

Suppressed N fixation and diazotrophs after four decades of fertilization

Background: N fixation is one of the most important microbially driven ecosystem processes on Earth, allowing N to enter the soil from the atmosphere, and regulating plant productivity. A question that remains to be answered is whether such a fundamental process would still be that important in an over-fertilized world, as the long-term effects of fertilization on N fixation and associated diazotrophic communities remain to be tested. Here, we used a 35-year fertilization experiment, and investigated the changes in N fixation rates and the diazotrophic community in response to long-term inorganic and organic fertilization. Results: It was found that N fixation was drastically reduced (dropped by 50%) after almost four decades of fertilization. Our results further indicated that functionality losses were associated with reductions in the relative abundance of keystone and phylogenetically clustered N fixers such as Geobacter spp. Conclusions: Our work suggests that long-term fertilization might have selected against N fixation and specific groups of N fixers. Our study provides solid evidence that N fixation and certain groups of diazotrophic taxa will be largely suppressed in a more and more fertilized world, with implications for soil biodiversity and ecosystem functions

Evaluation of microbe-driven soil organic matter quantity and quality by thermodynamic theory

Microbial communities, coupled with substrate quality and availability, regulate the stock (formation versus mineralization) of soil organic matter (SOM) in terrestrial ecosystems. However, our understanding of how soil microbes interact with contrasting substrates influencing SOM quantity and quality is still very superfi-cial. Here, we used thermodynamic theory principles and Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) to evaluate the linkages between dissolved organic matter (DOM [organic substrates in soil that are readily available]), thermodynamic quality, and microbial communities. We investigated soils from subtropical paddy ecosystems across a 1,000-km gradient and comprising contrasting levels of SOM content and nutrient availability. Our region-scale study suggested that soils with a larger abundance of readily accessible resources (i.e., lower Gibbs free energy) supported higher levels of microbial diversity and higher SOM content. We further advocated a novel phylotype-level microbial classification based on their associations with OM quantities and qualities and identified two contrasting clusters of bacterial taxa: phylotypes that are highly positively correlated with thermodynami-cally favorable DOM and larger SOM content versus those which are associated with less-favorable DOM and lower SOM content. Both groups are expected to play criti-cal roles in regulating SOM contents in the soil. By identifying the associations between microbial phylotypes of different life strategies and OM qualities and quan-tities, our study indicates that thermodynamic theory can act as a proxy for the relationship between OM and soil microbial communities and should be considered in models of soil organic matter preservation. IMPORTANCE Microbial communities are known to be important drivers of organic matter (OM) accumulation in terrestrial ecosystems. However, despite the importance of these soil microbes and processes, the mechanisms behind these microbial-SOM associations remain poorly understood. Here, we used the principles of thermodynamic theory and novel Fourier transform ion cyclotron resonance mass spectrome-try techniques to investigate the links between microbial communities and dissolved OM (DOM) thermodynamic quality in soils across a 1,000-km gradient and comprising contrasting nutrient and C contents. Our region-scale study provided evidence that soils with a larger amount of readily accessible resources (i.e., lower Gibbs free energy) supported higher levels of microbial diversity and larger SOM con-tent. Moreover, we created a novel phylotype-level microbial classification based on the associations between microbial taxa and DOM quantities and qualities. We found two contrasting clusters of bacterial taxa based on their level of association with thermodynamically favorable DOM and SOM content. Our study advan-ces our knowledge on the important links between microbial communities and SOM. Moreover, by identifying the associations between microbial phylotypes of different life strategies and OM qualities and quantities, our study indicates that thermodynamic theory can act as a proxy for the relationship between OM and soil microbial communities. Together, our findings support that the association between microbial species taxa and substrate thermodynamic quality constituted an important complement explanation for soil organic matter preservation