The Reduction of Storm Surge by Vegetation Canopies: Three-Dimensional Simulations

Significant buffering of storm surges by vegetation canopies has been suggested by limited observations and simple numerical studies, particularly following recent Hurricanes Katrina, Rita, and Wilma. Here we simulate storm surge and inundation over idealized topographies using a three-dimensional vegetation-resolving storm surge model coupled to a shallow water wave model and show that a sufficiently wide and tall vegetation canopy reduces inundation on land by 5 to 40 percent, depending upon various storm and canopy parameters. Effectiveness of the vegetation in dissipating storm surge and inundation depends on the intensity and forward speed of the hurricane, as well as the density, height, and width of the vegetation canopy. Reducing the threat to coastal vegetation from development, sea level rise, and other anthropogenic factors would help to protect many coastal regions against storm surges

Capping of an Extremely Soft Neutralised Uranium Tailings − A Case History in Environmental Geomechanics

The environmental regulation for Ranger Uranium Mine, in the Northern Territory, Australia, requires the stored tailings (irrespective of where they are finally stored, whether in a tailings dam or in mined-out pits) be capped safely to minimise contamination, erosion and radon gas emission, and also to enable the site to be rehabilitated through revegetation. The hydraulically deposited neutralised tailings in the existing tailings dam have a ‘gel-like’ structure which hinders the consolidation process. Consequently, the in situ tailings have a high water content, low permeability and extremely low shear strength. The present paper describes the case history of a successful capping trial constructed on these extremely soft tailings. Environmental geotechnical issues are highlighted and investigated. Results, especially the characteristics of the tailings observed during the construction and subsequent monitoring, are also discussed

Three-dimensional calculation of supersonic reacting flows using an LU scheme

A new three-dimensional numerical program incorporated with comprehensive real gas property models was developed to simulate supersonic reacting flows. The code employs an implicit finite volume, Lower-Upper (LU) time-marching method to solve the complete Navier-Stokes and species equations in a fully-coupled and very efficient manner. A chemistry model with nine species and eighteen reaction steps are adopted in the program to represent the chemical reaction of H2 and air. To demonstrate the capability of the program, flow fields of underexpanded hydrogen jets transversely injected into supersonic air stream inside the combustors of scramjets are calculated. Results clearly depict the flow characteristics, including the shock structure, separated flow regions around the injector, and the distribution of the combustion products

Three-dimensional calculations of supersonic reacting flows using an LU scheme

A 3-D numerical program that incorporates comprehensive real gas property models was developed to simulate supersonic reacting flows. The code employs an implicit, finite volume, Lower-Upper (LU), time-marching method to solve the complete Navier-Stokes and species equations in a fully-coupled and efficient manner. A chemistry model with 9 species and 18 reaction steps is adopted in the program to represent the chemical reactions of H2 and air. To demonstrate the capability of the program, flow fields of underexpanded hydrogen jets transversely injected into the supersonic airstream inside the combustors of scramjets are calculated. Results clearly depict the flow characteristics, including the shock structure, the separated flow regions around the injector, and the distribution of the combustion products

Sparse Encoding of Binocular Images for Depth Inference

Sparse coding models have been widely used to decompose monocular images into linear combinations of small numbers of basis vectors drawn from an overcomplete set. However, little work has examined sparse coding in the context of stereopsis. In this paper, we demonstrate that sparse coding facilitates better depth inference with sparse activations than comparable feed-forward networks of the same size. This is likely due to the noise and redundancy of feed-forward activations, whereas sparse coding utilizes lateral competition to selectively encode image features within a narrow band of depths

Recent breakthroughs in carrier depletion based silicon optical modulators

The majority of the most successful optical modulators in silicon demonstrated in recent years operate via the plasma dispersion effect and are more specifically based upon free carrier depletion in a silicon rib waveguide. In this work we overview the different types of free carrier depletion type optical modulators in silicon. A summary of some recent example devices for each configuration is then presented together with the performance that they have achieved. Finally an insight into some current research trends involving silicon based optical modulators is provided including integration, operation in the mid-infrared wavelength range and application in short and long haul data transmission link

Characterization of heterogeneity and spatial distribution of phases in complex solid dispersions by thermal analysis by structural characterization and X-ray micro computed tomography

Purpose: This study investigated the effect of drug-excipient miscibility on the heterogeneity and spatial distribution of phase separation in pharmaceutical solid dispersions at a micron-scale using two novel and complementary characterization techniques, thermal analysis by structural characterization (TASC) and X-ray micro-computed tomography (XCT) in conjunction with conventional characterization methods. Method: Complex dispersions containing felodipine, TPGS, PEG and PEO were prepared using hot melt extrusion-injection moulding. The phase separation behavior of the samples was characterized using TASC and XCT in conjunction with conventional thermal, microscopic and spectroscopic techniques. The in vitro drug release study was performed to demonstrate the impact of phase separation on dissolution of the dispersions. Results: The conventional characterization results indicated the phase separating nature of the carrier materials in the patches and the presence of crystalline drug in the patches with the highest drug loading (30% w/w). TASC and XCT where used to provide insight into the spatial configuration of the separate phases. TASC enabled assessment of the increased heterogeneity of the dispersions with increasing the drug loading. XCT allowed the visualization of the accumulation of phase separated (crystalline) drug clusters at the interface of air pockets in the patches with highest drug loading which led to poor dissolution performance. Semi-quantitative assessment of the phase separated drug clusters in the patches were attempted using XCT. Conclusion: TASC and XμCT can provide unique information regarding the phase separation behavior of solid dispersions which can be closely associated with important product quality indicators such as heterogeneity and microstructure

Formation of Super-Earths

Super-Earths are the most abundant planets known to date and are characterized by having sizes between that of Earth and Neptune, typical orbital periods of less than 100 days and gaseous envelopes that are often massive enough to significantly contribute to the planet's overall radius. Furthermore, super-Earths regularly appear in tightly-packed multiple-planet systems, but resonant configurations in such systems are rare. This chapters summarizes current super-Earth formation theories. It starts from the formation of rocky cores and subsequent accretion of gaseous envelopes. We follow the thermal evolution of newly formed super-Earths and discuss their atmospheric mass loss due to disk dispersal, photoevaporation, core-cooling and collisions. We conclude with a comparison of observations and theoretical predictions, highlighting that even super-Earths that appear as barren rocky cores today likely formed with primordial hydrogen and helium envelopes and discuss some paths forward for the future.Comment: Invited review accepted for publication in the 'Handbook of Exoplanets,' Planet Formation section, Springer Reference Works, Juan Antonio Belmonte and Hans Deeg, Ed

BET bromodomain proteins regulate enhancer function during adipogenesis

Developmental transitions are guided by master regulatory transcription factors. During adipogenesis, a transcriptional cascade culminates in the expression of PPARγ and C/EBPα, which orchestrate activation of the adipocyte gene expression program. However, the coactivators controlling PPARγ and C/EBPα expression are less well characterized. Here, we show the bromodomain-containing protein, BRD4, regulates transcription of PPARγ and C/EBPα. Analysis of BRD4 chromatin occupancy reveals that induction of adipogenesis in 3T3L1 fibroblasts provokes dynamic redistribution of BRD4 to de novo super-enhancers proximal to genes controlling adipocyte differentiation. Inhibition of the bromodomain and extraterminal domain (BET) family of bromodomain-containing proteins impedes BRD4 occupancy at these de novo enhancers and disrupts transcription of Pparg and Cebpa, thereby blocking adipogenesis. Furthermore, silencing of these BRD4-occupied distal regulatory elements at the Pparg locus by CRISPRi demonstrates a critical role for these enhancers in the control of Pparg gene expression and adipogenesis in 3T3L1s. Together, these data establish BET bromodomain proteins as time- and context-dependent coactivators of the adipocyte cell state transition

Functional Diversity and Structural Disorder in the Human Ubiquitination Pathway

The ubiquitin-proteasome system plays a central role in cellular regulation and protein quality control (PQC). The system is built as a pyramid of increasing complexity, with two E1 (ubiquitin activating), few dozen E2 (ubiquitin conjugating) and several hundred E3 (ubiquitin ligase) enzymes. By collecting and analyzing E3 sequences from the KEGG BRITE database and literature, we assembled a coherent dataset of 563 human E3s and analyzed their various physical features. We found an increase in structural disorder of the system with multiple disorder predictors (IUPred - E1: 5.97%, E2: 17.74%, E3: 20.03%). E3s that can bind E2 and substrate simultaneously (single subunit E3, ssE3) have significantly higher disorder (22.98%) than E3s in which E2 binding (multi RING-finger, mRF, 0.62%), scaffolding (6.01%) and substrate binding (adaptor/substrate recognition subunits, 17.33%) functions are separated. In ssE3s, the disorder was localized in the substrate/adaptor binding domains, whereas the E2-binding RING/HECT-domains were structured. To demonstrate the involvement of disorder in E3 function, we applied normal modes and molecular dynamics analyses to show how a disordered and highly flexible linker in human CBL (an E3 that acts as a regulator of several tyrosine kinase-mediated signalling pathways) facilitates long-range conformational changes bringing substrate and E2-binding domains towards each other and thus assisting in ubiquitin transfer. E3s with multiple interaction partners (as evidenced by data in STRING) also possess elevated levels of disorder (hubs, 22.90% vs. non-hubs, 18.36%). Furthermore, a search in PDB uncovered 21 distinct human E3 interactions, in 7 of which the disordered region of E3s undergoes induced folding (or mutual induced folding) in the presence of the partner. In conclusion, our data highlights the primary role of structural disorder in the functions of E3 ligases that manifests itself in the substrate/adaptor binding functions as well as the mechanism of ubiquitin transfer by long-range conformational transitions. © 2013 Bhowmick et al