4 research outputs found
Mitochondrial physiology
As the knowledge base and importance of mitochondrial physiology to evolution, health and disease expands, the necessity for harmonizing the terminology concerning mitochondrial respiratory states and rates has become increasingly apparent. The chemiosmotic theory establishes the mechanism of energy transformation and coupling in oxidative phosphorylation. The unifying concept of the protonmotive force provides the framework for developing a consistent theoretical foundation of mitochondrial physiology and bioenergetics. We follow the latest SI guidelines and those of the International Union of Pure and Applied Chemistry (IUPAC) on terminology in physical chemistry, extended by considerations of open systems and thermodynamics of irreversible processes. The concept-driven constructive terminology incorporates the meaning of each quantity and aligns concepts and symbols with the nomenclature of classical bioenergetics. We endeavour to provide a balanced view of mitochondrial respiratory control and a critical discussion on reporting data of mitochondrial respiration in terms of metabolic flows and fluxes. Uniform standards for evaluation of respiratory states and rates will ultimately contribute to reproducibility between laboratories and thus support the development of data repositories of mitochondrial respiratory function in species, tissues, and cells. Clarity of concept and consistency of nomenclature facilitate effective transdisciplinary communication, education, and ultimately further discovery
Mitochondrial physiology
As the knowledge base and importance of mitochondrial physiology to evolution, health and disease expands, the necessity for harmonizing the terminology concerning mitochondrial respiratory states and rates has become increasingly apparent. The chemiosmotic theory establishes the mechanism of energy transformation and coupling in oxidative phosphorylation. The unifying concept of the protonmotive force provides the framework for developing a consistent theoretical foundation of mitochondrial physiology and bioenergetics. We follow the latest SI guidelines and those of the International Union of Pure and Applied Chemistry (IUPAC) on terminology in physical chemistry, extended by considerations of open systems and thermodynamics of irreversible processes. The concept-driven constructive terminology incorporates the meaning of each quantity and aligns concepts and symbols with the nomenclature of classical bioenergetics. We endeavour to provide a balanced view of mitochondrial respiratory control and a critical discussion on reporting data of mitochondrial respiration in terms of metabolic flows and fluxes. Uniform standards for evaluation of respiratory states and rates will ultimately contribute to reproducibility between laboratories and thus support the development of data repositories of mitochondrial respiratory function in species, tissues, and cells. Clarity of concept and consistency of nomenclature facilitate effective transdisciplinary communication, education, and ultimately further discovery
Investigating Patterns of Mitochondrial DNA Inheritance Using New Zealand Chinook Salmon (Oncorhynchus tshawytscha) as a Model Organism
The laws for the inheritance of animal mitochondrial DNA differ from those revealed for
nuclear DNA. In contrast to nuclear genes, animal mitochondrial DNA (mtDNA) is
predominantly inherited through the maternal line and is typically assumed to be nonrecombining.
The absence of both paternal transmission (hereafter: paternal leakage) and
heterologous recombination of mtDNA are assumed to be key characteristics of
mitochondrial DNA inheritance, which has enabled evolutionary models to be much
simpler than those needed for the interpretation of nuclear DNA. However, recent
revelations of paternal leakage in the animal kingdom challenge our current knowledge
about mtDNA inheritance and the utility of mtDNA as a molecular marker. The occurrence
of paternal leakage potentially introduces new haplotypes into populations and therefore
impacts on the interpretation of mtDNA analysis. To date, it is unclear whether the
documented cases of paternal leakage are exceptions to the general rule or if these events
occur more frequently than so far believed. If this event occurred at a measurable
frequency, it is vital to implement such data into models of mtDNA evolution to improve
the accuracy at which evolutionary relationships and times of divergence are estimated.
In this thesis, I aimed to provide an insight into the broader patterns of mtDNA
inheritance using chinook salmon as a model organism. I first sought to delimit the
frequency of paternal leakage in chinook salmon and further investigated two major
mechanisms which are believed to limit paternal leakage: The many-fold dilution of
paternal mtDNA by maternal mtDNA upon fertilization and the genetic bottleneck mtDNA
is believed to be exposed to during early developmental stages.
A screen of roughly 10.000 offspring did not reveal the presence of paternal
mtDNA within these samples delimiting the maximum frequency of paternal leakage in
this system to 0.18% (power of 0.95) and 0.27% (power of 0.99), suggesting that the
occurrence of paternal leakage is most likely an exception to the general rule.
To infer the dilution of paternal mtDNA upon fertilization, I employed real-time
PCR and determined the mtDNA content of salmon spermatozoa and oocytes to be 5.73 ±
2.28 and 3.15x109 ± 9.98x108 molecules per gamete, respectively. Accordingly, the
estimated ratio of paternal to maternal mtDNA in zygotes is 1:7.35x108 ± 4.67x108. This
estimate is 3 to 5 orders of magnitude smaller than the ratio revealed for mammals.
Consequently, and if the dilution acts as an efficient barrier against the transmission
of paternal mtDNA, paternal inheritance of mtDNA per offspring will be much less likely
in this system than in mammals. To estimate at what probability the diminutive
contribution of paternal mtDNA in zygotes is potentially inherited to offspring, I
determined the size of the bottleneck acting on mtDNA during both embryogenesis and
oogensis by examining the transmission of mtDNA variants to offspring and oocytes
within a pedigree of heteroplasmic individuals. The number of segregating units (mtDNAs)
between a motherâs somatic tissue and oocytes was estimated to be 109.3 (median = 109.3;
62.4 < NeOog < 189.6; 95% confidence interval) and from a motherâs soma to offspringâs
soma 105.4 (median = 105.4; 70.3 < NeEmb < 153.1; 95% confidence interval). Detected
variances in allele frequency among oocytes were not significantly different from those in
offspring, strongly suggesting that segregation of mtDNA occurs during oogenesis with its
completion before oocyte maturation. However, considering a ratio of roughly 1:7.35x108
for paternal to maternal mtDNA in zygotes and that approximately 109.3 (NeOog) of the
mitochondrial genomes present in zygotes are ultimately inherited to offspring, the
probability for paternal mtDNA to be transmitted to offspring is in round terms
1.0x10-11/paternal mtDNA molecule.
In summary, the results presented in this thesis document the presence of efficient
barriers to prohibit the inheritance of minor allele contributions, such as paternal mtDNA,
to offspring. These results strongly suggest that paternal leakage is an exception to the
general rule. Furthermore, in comparison to studies undertaken in mammals, my results
indicate that mechanisms in place to prevent paternal leakage may be unequally efficient
among different animal taxa, reflecting differences in life traits, such as gamete
morphology, gamete investment and reproductive strategies.
Nonetheless, by the means of the dilution effect in zygotes and the genetic
bottleneck during oogenesis, the occurrence of paternal leakage might be simply a
quantitative phenomenon and cannot be excluded per se. The increasing number of
documented cases of paternal leakage clarifies that its occurrence must be considered when
applying mtDNA as a genetic marker. Furthermore, for species in which mtDNA
inheritance can be confirmed to be purely random, theoretical frequencies of paternal
leakage can be inferred and potentially implemented into models of mtDNA evolution