Detection of Seasonal Pratylenchus Brachyurus Nematode Populations

Plant Patholog

Metal impact and vaporization on the Moon's surface: nano‐geochemical insights into the source of lunar metals

Millimeter-to-nanometer-sized iron- and nickel-rich metals are ubiquitous on the lunar surface. The proposed origin of these metals falls into two broad classes which should have distinct geochemical signatures—(1) the reduction of iron-bearing minerals or (2) the addition of metals from meteoritic sources. The metals measured here from the Apollo 16 regolith possess low Ni (2–6 wt%) and elevated Ge (80–350 ppm) suggesting a meteoritic origin. However, the measured Ni is lower, and the Ge higher than currently known iron meteorites. In comparison to the low Ni iron meteorites, the even lower Ni and higher Ge contents exhibited by these lunar metals are best explained by impact-driven volatilization and condensation of Ni-poor meteoritic metal during their impact and addition to the lunar surface. The presence of similar, low Ni-bearing metals in Apollo return samples from geographically distant sites suggests that this geochemical signature might not be restricted to just the Apollo 16 locality and that volatility-driven modification of meteoritic metals are a common feature of lunar regolith formation. The possibility of a significant low Ni/high Ge meteoritic component in the lunar regolith, and the observation of chemical fractionation during emplacement, has implications for the interpretation of both lunar remote-sensing data and bulk geochemical data derived from sample return material. Additionally, our observation of predominantly meteoritic sourced metals has implications for the prevalence of meteoritic addition on airless planetary bodies

Evaluation of Tissue-engineered Tendon Enthesis Polymer Constructs

Both scientists and clinicians have proposed tissue engineering as the future of medicine. The possibilities for tissue engineering, that is, fabrication of tissues and organs in the laboratory and their translation to patients, appear to be endless, and many believe that this new approach in medicine will result in abolishing many common ailments, injuries, and congenital defects. Injuries to a tendon enthesis, the normal tissue connection between tendon and bone, are of particular concern to clinicians because of their frequency and failure to repair as a result of surgery. While these injuries may not be life threatening, they can certainly limit mobility and reduce the quality of life in those affected individuals. Fabrication of a tendon enthesis by tissue engineering would offer an alternative to the routine of surgery now performed and present potential for treatment and healing of the tissue now unavailable. In the current prospective study, polymer scaffolds created using polycaprolactone (PCL), poly-L lactide (PLLA), or nano-polyglycolic acid (nPGA) were seeded with chondrocytes, tenocytes, and periosteum for the development of cartilage, tendon and bone, respectively, and then implanted into six athymic nude mice for a period of 10 weeks. One group of constructs (scaffolds and cells or tissue together) was tethered to the mice 2 in order to determine if mechanical forces improved or were required for tendon enthesis formation compared to a group of identical implanted constructs that were not tethered. Analysis by histology illustrated a noticeable increase in tissue formation around the area of anticipated enthesis in tethered constructs when compared to constructs that were not tethered. Based on these data, it is believed that mechanical tension (tethering) is required for the formation of a tendon enthesi

Robustness of potential biological removal to monitoring, environmental, and management uncertainties

Support for this project was provided by the Lenfest Ocean Program.The potential biological removal (PBR) formula used to determine a reference point for human-caused mortality of marine mammals in the United States has been shown to be robust to several sources of uncertainty. This study investigates the consequences of the quality of monitoring on PBR performance. It also explores stochastic and demographic uncertainty, catastrophic events, sublethal effects of interactions with fishing gear, and the situation of a marine mammal population subject to bycatch in two fisheries, only one of which is managed. Results are presented for two pinniped and two cetacean life histories. Bias in abundance estimates and whether there is a linear relationship between abundance estimates and true abundance most influence conservation performance. Catastrophic events and trends in natural mortality have larger effects than environmental stochasticity. Managing only one of two fisheries with significant bycatch leads, as expected, to a lower probability of achieving conservation management goals, and better outcomes would be achieved if bycatch in all fisheries were managed. The results are qualitatively the same for the four life histories, but estimates of the probability of population recovery differ.Publisher PDFPeer reviewe

Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

Recent exploration into the interactions and relationship between hosts and their microbiota has revealed a connection between many aspects of the host's biology, health and associated micro-organisms. Whereas amplicon sequencing has traditionally been used to characterize the microbiome, the increasing number of published population genomics data sets offers an underexploited opportunity to study microbial profiles from the host shotgun sequencing data. Here, we use sequence data originally generated from killer whale Orcinus orca skin biopsies for population genomics, to characterize the skin microbiome and investigate how host social and geographical factors influence the microbial community composition. Having identified 845 microbial taxa from 2.4 million reads that did not map to the killer whale reference genome, we found that both ecotypic and geographical factors influence community composition of killer whale skin microbiomes. Furthermore, we uncovered key taxa that drive the microbiome community composition and showed that they are embedded in unique networks, one of which is tentatively linked to diatom presence and poor skin condition. Community composition differed between Antarctic killer whales with and without diatom coverage, suggesting that the previously reported episodic migrations of Antarctic killer whales to warmer waters associated with skin turnover may control the effects of potentially pathogenic bacteria such as Tenacibaculum dicentrarchi. Our work demonstrates the feasibility of microbiome studies from host shotgun sequencing data and highlights the importance of metagenomics in understanding the relationship between host and microbial ecology

The Cycladic Blueschist Unit on Tinos, Greece: Cold NE Subduction and SW Directed Extrusion of the Cycladic Continental Margin Under the Tsiknias Ophiolite

High pressure‐low temperature (HP‐LT) metamorphic rocks structurally beneath the Tsiknias Ophiolite make up the interior of Tinos Island, Greece, but their relationship with the overlying ophiolite is poorly understood. Here, new field observations are integrated with petrological modeling of eclogite and blueschists to provide new insight into their tectonothermal evolution. Pseudomorphed lawsonite‐, garnet‐, and glaucophane‐bearing schists exposed at the highest structural levels of Tinos (Kionnia and Pyrgos Subunits) reached ~22–26 kbar and 490–520°C under water‐saturated conditions, whereas pseudomorphed lawsonite‐ and aegirine‐omphacite bearing eclogite reached ~20–23 kbar and 530–570°C. These rocks are separated from rocks at deeper structural levels (Sostis Subunit) by a top‐to‐SW thrust. The Sostis Subunit records P‐T conditions of ~18.5 kbar and 480–510°C and is overprinted by pervasive top‐to‐NE shearing that developed during exhumation from (M1) blueschist to (M2) greenschist facies conditions of ~7.3 ± 0.7 kbar and 536 ± 16°C. These P‐T‐D relationships suggest that the Cycladic Blueschist Unit represents a discrete series of tectonometamorphic subunits that each experienced different tectonic and thermal histories. These subunits were buried to variable depths and sequentially extruded toward the SW from a NE dipping subduction zone. The difference in age and P‐T conditions between the HP‐LT rocks and the overlying metamorphic sole of the Tsiknias Ophiolite suggests that this NE dipping subduction zone was active between circa 74 and 46 Ma and cooled at a minimum rate of ~1.2–1.5°C/km/Myr prior to continent‐continent collision between Eurasia and Adria/Cyclades

Runs of homozygosity in killer whale genomes provide a global record of demographic histories

Runs of homozygosity (ROH) occur when offspring inherit haplotypes that are identical by descent from each parent. Length distributions of ROH are informative about population history; specifically, the probability of inbreeding mediated by mating system and/or population demography. Here, we investigated whether variation in killer whale (Orcinus orca) demographic history is reflected in genome-wide heterozygosity and ROH length distributions, using a global data set of 26 genomes representative of geographic and ecotypic variation in this species, and two F1 admixed individuals with Pacific-Atlantic parentage. We first reconstructed demographic history for each population as changes in effective population size through time using the pairwise sequential Markovian coalescent (PSMC) method. We found a subset of populations declined in effective population size during the Late Pleistocene, while others had more stable demography. Genomes inferred to have undergone ancestral declines in effective population size, were autozygous at hundreds of short ROH (1.5 Mb) were found in low latitude populations, and populations of known conservation concern. These include a Scottish killer whale, for which 37.8% of the autosomes were comprised of ROH >1.5 Mb in length. The fate of this population, in which only two adult males have been sighted in the past five years, and zero fecundity over the last two decades, may be inextricably linked to its demographic history and consequential inbreeding depression

Phenotypic Signatures Arising from Unbalanced Bacterial Growth

Fluctuations in the growth rate of a bacterial culture during unbalanced growth are generally considered undesirable in quantitative studies of bacterial physiology. Under well-controlled experimental conditions, however, these fluctuations are not random but instead reflect the interplay between intra-cellular networks underlying bacterial growth and the growth environment. Therefore, these fluctuations could be considered quantitative phenotypes of the bacteria under a specific growth condition. Here, we present a method to identify “phenotypic signatures” by time-frequency analysis of unbalanced growth curves measured with high temporal resolution. The signatures are then applied to differentiate amongst different bacterial strains or the same strain under different growth conditions, and to identify the essential architecture of the gene network underlying the observed growth dynamics. Our method has implications for both basic understanding of bacterial physiology and for the classification of bacterial strains

Total Intravenous Anesthesia Including Ketamine versus Volatile Gas Anesthesia for Combat-related Operative Traumatic Brain Injury

Background: Traumatic brain injury is a leading cause of death and severe neurologic disability. The effect of anesthesia techniques on neurologic outcomes in traumatic brain injury and potential benefits of total intravenous anesthesia (TIVA) compared with volatile gas anesthesia (VGA), although proposed, has not been well evaluated. The purpose of this study was to compare TIVA versus VGA in patients with combatrelated traumatic brain injury. Methods: The authors retrospectively reviewed 252 patients who had traumatic brain injury and underwent operative neurosurgical intervention. Statistical analyses, including propensity score and matched analyses, were performed to assess differences between treatment groups (TIVA vs. VGA) and good neurologic outcome. Results: Two hundred fourteen patients met inclusion criteria and were analyzed; 120 received VGA and 94 received TIVA. Good neurologic outcome (Glasgow Outcome Score 4 -5) and decreased mortality were associated with TIVA compared with VGA (75% vs. 54%; P ‫؍‬ 0.002 and 5% vs. 16%; P ‫؍‬ 0.02, respectively). Multivariate logistic regression found admission Glasgow Coma Scale score of 8 or greater (odds ratio, 13.3; P < 0.001) and TIVA use (odds ratio, 2.3; P ‫؍‬ 0.05) to be associated with good neurologic outcomes. After controlling for confounding factors using propensity analysis and repeated one-to-one matching of patients receiving TIVA with those receiving VGA with regard to Injury Severity Score, Glasgow Coma Scale score, base deficit, Head Abbreviated Injury Score, and craniectomy or craniotomy, the authors could not find an association between treatment and neurologic outcome. Conclusion: Total intravenous anesthesia often including ketamine was not associated with improved neurologic outcom