Knowledge Rich Natural Language Queries over Structured Biological Databases

Increasingly, keyword, natural language and NoSQL queries are being used for information retrieval from traditional as well as non-traditional databases such as web, document, image, GIS, legal, and health databases. While their popularity are undeniable for obvious reasons, their engineering is far from simple. In most part, semantics and intent preserving mapping of a well understood natural language query expressed over a structured database schema to a structured query language is still a difficult task, and research to tame the complexity is intense. In this paper, we propose a multi-level knowledge-based middleware to facilitate such mappings that separate the conceptual level from the physical level. We augment these multi-level abstractions with a concept reasoner and a query strategy engine to dynamically link arbitrary natural language querying to well defined structured queries. We demonstrate the feasibility of our approach by presenting a Datalog based prototype system, called BioSmart, that can compute responses to arbitrary natural language queries over arbitrary databases once a syntactic classification of the natural language query is made

Symbolic Dynamics Analysis of the Lorenz Equations

Recent progress of symbolic dynamics of one- and especially two-dimensional maps has enabled us to construct symbolic dynamics for systems of ordinary differential equations (ODEs). Numerical study under the guidance of symbolic dynamics is capable to yield global results on chaotic and periodic regimes in systems of dissipative ODEs which cannot be obtained neither by purely analytical means nor by numerical work alone. By constructing symbolic dynamics of 1D and 2D maps from the Poincare sections all unstable periodic orbits up to a given length at a fixed parameter set may be located and all stable periodic orbits up to a given length may be found in a wide parameter range. This knowledge, in turn, tells much about the nature of the chaotic limits. Applied to the Lorenz equations, this approach has led to a nomenclature, i.e., absolute periods and symbolic names, of stable and unstable periodic orbits for an autonomous system. Symmetry breakings and restorations as well as coexistence of different regimes are also analyzed by using symbolic dynamics.Comment: 35 pages, LaTeX, 13 Postscript figures, uses psfig.tex. The revision concerns a bug at the end of hlzfig12.ps which prevented the printing of the whole .ps file from page 2

Neutrino Spin Transitions and the Violation of the Equivalence Principle

The violation of the equivalence principle (VEP) causing neutrino oscillations is of current interest. We study here the possibility of not only flavor oscillation but spin flavor oscillation of ultra high energy ($\sim$ 1 PeV) neutrinos emanating from AGN due to VEP and due to the presence of a large magnetic field ($\sim$ 1 Tesla) in AGN. In particular we look at the resonance spin flavor conversion driven by the AGN potential. Interesting bounds on the transition magnetic moment of neutrinos may therefore be obtained.Comment: Latex, 12 pages, no figures. To appear in Journal of Physics G: Nuclear and Particle Physics. Two references adde

The Energy of a Trapped Interacting Bose Gas

A Bose gas in an external potential is studied by means of the semi-classical approximation. Analytical results are derived for the energy of an interacting Bose gas in a generic power-law trapping potential. An expression for the chemical potential below the critical temperature is also obtained. The theoretical results are in qualitative agreement with a recent energy measurement.Comment: 6 pages, REVTex, one figure

Survey and scientific evaluation of medicinal plants used by the Pahan and Teli tribal communities of Natore district, Bangladesh

The Pahans and the Telis are two of the smallest indigenous communities in Bangladesh. The Pahans, numbering about 14,000 people are widely scattered in several northern districts of the country, while the Telis are such a small community that nothing has been reported on their numbers and lifestyle. Both tribes are on the verge of disappearance. One each of the Pahan and the Teli community was located after much search in two adjoining villages of Natore district, Bangladesh. Since the tribes were found to still depend on their traditional medicinal practitioners for treatment of ailments, it was the objective of the present study to document their traditional usage of medicinal plants and to evaluate such plants against modern research-based pharmacological activity studies on these plants. Interviews were conducted of the practitioners of the Pahan and Teli community of Natore district with the help of a semi-structured questionnaire and using the guided field-walk method. Plant specimens aspointed out by the practitioners were collected and pressed on the field and identification completed at the Bangladesh National Herbarium. The Pahan tribal practitioners used 13 plants distributed into 9 families for treatment of 14 different ailments. The Teli tribal practitioner used 15 plants divided into 14 families for treatment of 17 different ailments. Eight out of the thirteen plants used by the Pahan tribal practitioner (61.5%) had reported relevant pharmacological activities in the scientific literature, while six out of the fifteen plants used by the Teli tribal practitioners (40%) had such relevant pharmacological activities in accordance with their usage. The medicinal plants used by the Pahans and Telis warrant further scientific studies toward discovery of lead compounds and efficacious drugs and the documentation and protection of the traditional medical knowledge held by these tribes

Patterned Geometries and Hydrodynamics at the Vortex Bose Glass Transition

Patterned irradiation of cuprate superconductors with columnar defects allows a new generation of experiments which can probe the properties of vortex liquids by confining them to controlled geometries. Here we show that an analysis of such experiments that combines an inhomogeneous Bose glass scaling theory with the hydrodynamic description of viscous flow of vortex liquids can be used to infer the critical behavior near the Bose glass transition. The shear viscosity is predicted to diverge as $|T-T_{BG}|^{-z}$ at the Bose glass transition, with $z\simeq 6$ the dynamical critical exponent.Comment: 5 pages, 4 figure