Host-pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies

Anticipating how epidemics will spread across landscapes requires understanding host dispersal events that are notoriously difficult to measure. Here, we contrast host and virus genetic signatures to resolve the spatiotemporal dynamics underlying geographic expansions of vampire bat rabies virus (VBRV) in Peru. Phylogenetic analysis revealed recent viral spread between populations that, according to extreme geographic structure in maternally inherited host mitochondrial DNA, appeared completely isolated. In contrast, greater population connectivity in biparentally inherited nuclear microsatellites explained the historical limits of invasions, suggesting that dispersing male bats spread VBRV between genetically isolated female populations. Host nuclear DNA further indicated unanticipated gene flow through the Andes mountains connecting the VBRV-free Pacific coast to the VBRV-endemic Amazon rainforest. By combining Bayesian phylogeography with landscape resistance models, we projected invasion routes through northern Peru that were validated by real-time livestock rabies mortality data. The first outbreaks of VBRV on the Pacific coast of South America could occur by June 2020, which would have serious implications for agriculture, wildlife conservation, and human health. Our results show that combining host and pathogen genetic data can identify sex biases in pathogen spatial spread, which may be a widespread but underappreciated phenomenon, and demonstrate that genetic forecasting can aid preparedness for impending viral invasions

Critical properties of the four-state Commutative Random Permutation Glassy Potts model in three and four dimensions

We investigate the critical properties of the four-state commutative random permutation glassy Potts model in three and four dimensions by means of Monte Carlo simulation and of a finite size scaling analysis. Thanks to the use of a field programmable gate array we have been able to thermalize a large number of samples of systems with large volume. This has allowed us to observe a spin-glass ordered phase in d=4 and to study the critical properties of the transition. In d=3, our results are consistent with the presence of a Kosterlitz-Thouless transition, but we cannot exclude transient effects due to a value of the lower critical dimension slightly below 3.Comment: 9 pages, 8 Postscript figure

First-principles based plasma profile predictions for optimized stellarators

In the present Letter, first-of-its-kind computer simulations predicting plasma profiles for modern optimized stellarators -- while self-consistently retaining neoclassical transport, turbulent transport with 3D effects, and external physical sources -- are presented. These simulations exploit a newly developed coupling framework involving the global gyrokinetic turbulence code GENE-3D, the neoclassical transport code KNOSOS, and the 1D transport solver TANGO. This framework is used to analyze the recently observed degradation of energy confinement in electron-heated plasmas in the Wendelstein 7-X stellarator, where the central ion temperature was "clamped" to $T_i \approx 1.5$ keV regardless of the external heating power. By performing first-principles based simulations, the key mechanism leading to this effect is identified and guidelines for improving the plasma performance in future experimental campaigns are put forth. This work paves the way towards the use of high-fidelity models for the development of the next generation of stellarators, in which neoclassical and turbulent transport are optimized simultaneously

Ianus: an Adpative FPGA Computer

Dedicated machines designed for specific computational algorithms can outperform conventional computers by several orders of magnitude. In this note we describe {\it Ianus}, a new generation FPGA based machine and its basic features: hardware integration and wide reprogrammability. Our goal is to build a machine that can fully exploit the performance potential of new generation FPGA devices. We also plan a software platform which simplifies its programming, in order to extend its intended range of application to a wide class of interesting and computationally demanding problems. The decision to develop a dedicated processor is a complex one, involving careful assessment of its performance lead, during its expected lifetime, over traditional computers, taking into account their performance increase, as predicted by Moore's law. We discuss this point in detail

Evidencias mineralógicas y geoquímicas de mezcla incompleta de magmas en la Sierra de las Cruces, Cinturón Volcánico Mexicano

Received: 19/05/2011 / Accepted: 12/04/2013.Pliocene – Pleistocene lava flows, mainly of dacitic composition, are exposed in the Sierra de las Cruces (SC) volcanic range within the Mexican Volcanic Belt (MVB). SC volcanic rocks are porphyritic, generally containing an assemblage of plagioclase + amphibole + orthopyroxene ± clinopyroxene ± quartz ± Fe-Ti oxides. Most of them exhibit diverse mineralogical and geochemical features that attest a magma mixing and mingling processes with concomitant fractional crystallization in which a small volume of hot andesite magma injects into dacitic magma. Both rock types are probably derived from partial melting of continental crust at different levels. The evidences of magma mixing and mingling include: (a) normal and sieved plagioclases in the same sample, rounded and embayed crystals, and armoured rims over the dissolved crystal surfaces; (b) subrounded, vesicular magmatic enclaves, ranging from a few millimeters to ~20 centimeters in size, with plagioclase + orthopyroxene + amphibole + quartz ± olivine ± Fe-Ti-oxides assemblage; (c) mineral chemistry evidence such as crystals with reaction rims or heterogeneous plagioclase compositions (inverse and oscillatory zoning or normally and inversely zoned crystals) in the same sample; and (d) elemental geochemical variations and trace-element ratio more akin to magma mixing and to some extent diffusion process. These andesitic enclaves could be considered as portions of the intermediate magma that did not mix completely (mingling) with the felsic host lavas, confirming the major role of magma mixing and mingling processes in the overall evolution of the MVB.En la Sierra de las Cruces (SC), Cinturón Volcánico Mexicano (CVM), se encuentran expuestos flujos de lava, principalmente de composición dacítica, del Plioceno-Pleistoceno. Las rocas volcánicas de la SC son de textura porfirítica, conteniendo plagioclasa + anfibol + ortopiroxeno ± clinopiroxeno ± cuarzo ± óxidos de Fe-Ti. La mayor parte de ellas exhiben diversas características que indican un proceso de mezcla incompleta de magmas, con una cristalización fraccionada concomitante, en la que un pequeño volumen de un magma andesítico caliente es inyectado a un magma dacítico. Es probable que ambos tipos de roca se hayan generado por fusión parcial a diferentes niveles de la corteza continental. Las evidencias de la mezcla incompleta de magmas incluyen: (a) plagioclasas con texturas normal y anubarrada en la misma muestra, cristales redondeados y corroídos, y bordes de reacción en superficies de cristal disueltas; (b) enclaves magmáticos subredondeados y vesiculares, que ocurren en dimensiones de un pocos milímetros a ~20 centímetros de diámetro, con plagioclasa + ortopiroxeno + anfíbol + cuarzo ± olivino ± óxidos de Fe-Ti; (c) química de minerales, que incluye cristales con bordes de reacción o plagioclasas de composición heterogénea (zonación inversa y oscilatoria o cristales con zonación normal e inversa) en la misma muestra; y (d) variaciones geoquímicas de elementos y relaciones de elementos traza explicables por una mezcla de magmas y por un proceso de difusión. Los enclaves andesíticos podrían considerarse como porciones de magma intermedio que no se mezcló con los líquidos dacíticos receptores, lo que confirma la importancia de los procesos de mezcla incompleta de magmas en la evolución magmática del CVM.Universidad Autónoma de Nuevo LeónDepto. de Mineralogía y PetrologíaFac. de Ciencias GeológicasTRUEpu

Evidencias mineralógicas y geoquímicas de mezcla incompleta de magmas en la Sierra de las Cruces, Cinturón Volcánico Mexicano

Pliocene – Pleistocene lava flows, mainly of dacitic composition, are exposed in the Sierra de las Cruces (SC) volcanic range within the Mexican Volcanic Belt (MVB). SC volcanic rocks are porphyritic, generally containing an assemblage of plagioclase + amphibole + orthopyroxene ± clinopyroxene ± quartz ± Fe-Ti oxides. Most of them exhibit diverse mineralogical and geochemical features that attest a magma mixing and mingling processes with concomitant fractional crystallization in which a small volume of hot andesite magma injects into dacitic magma. Both rock types are probably derived from partial melting of continental crust at different levels. The evidences of magma mixing and mingling include: (a) normal and sieved plagioclases in the same sample, rounded and embayed crystals, and armoured rims over the dissolved crystal surfaces; (b) subrounded, vesicular magmatic enclaves, ranging from a few millimeters to ~20 centimeters in size, with plagioclase + orthopyroxene + amphibole + quartz ± olivine ± Fe-Ti-oxides assemblage; (c) mineral chemistry evidence such as crystals with reaction rims or heterogeneous plagioclase compositions (inverse and oscillatory zoning or normally and inversely zoned crystals) in the same sample; and (d) elemental geochemical variations and trace-element ratio more akin to magma mixing and to some extent diffusion process. These andesitic enclaves could be considered as portions of the intermediate magma that did not mix completely (mingling) with the felsic host lavas, confirming the major role of magma mixing and mingling processes in the overall evolution of the MVBEn la Sierra de las Cruces (SC), Cinturón Volcánico Mexicano (CVM), se encuentran expuestos flujos de lava, principalmente de composición dacítica, del Plioceno-Pleistoceno. Las rocas volcánicas de la SC son de textura porfirítica, conteniendo plagioclasa + anfibol + ortopiroxeno ± clinopiroxeno ± cuarzo ± óxidos de Fe-Ti. La mayor parte de ellas exhiben diversas características que indican un proceso de mezcla incompleta de magmas, con una cristalización fraccionada concomitante, en la que un pequeño volumen de un magma andesítico caliente es inyectado a un magma dacítico. Es probable que ambos tipos de roca se hayan generado por fusión parcial a diferentes niveles de la corteza continental. Las evidencias de la mezcla incompleta de magmas incluyen: (a) plagioclasas con texturas normal y anubarrada en la misma muestra, cristales redondeados y corroídos, y bordes de reacción en superficies de cristal disueltas; (b) enclaves magmáticos subredondeados y vesiculares, que ocurren en dimensiones de un pocos milímetros a ~20 centímetros de diámetro, con plagioclasa + ortopiroxeno + anfíbol + cuarzo ± olivino ± óxidos de Fe-Ti; (c) química de minerales, que incluye cristales con bordes de reacción o plagioclasas de composición heterogénea (zonación inversa y oscilatoria o cristales con zonación normal e inversa) en la misma muestra; y (d) variaciones geoquímicas de elementos y relaciones de elementos traza explicables por una mezcla de magmas y por un proceso de difusión. Los enclaves andesíticos podrían considerarse como porciones de magma intermedio que no se mezcló con los líquidos dacíticos receptores, lo que confirma la importancia de los procesos de mezcla incompleta de magmas en la evolución magmática del CV

RIP2 plays a role in cardiac Ca2+ mishandling prompted by chronic kidney disease

post-print81,7 K

The Spin Glass Phase in the Four-State, Three-Dimensional Potts Model

We perform numerical simulations, including parallel tempering, on the Potts glass model with binary random quenched couplings using the JANUS application-oriented computer. We find and characterize a glassy transition, estimating the location of the transition and the value of the critical exponents. We show that there is no ferromagnetic transition in a large temperature range around the glassy critical temperature. We also compare our results with those obtained recently on the "random permutation" Potts glass.Comment: 7 pages and 3 figures. Corrected minor typo