Fish distribution in the Ba Che and Tien Yen rivers

The ichthyo-fauna in the Ba Che and Tien Yen rivers, northern Vietnam is highly diverse, with a total of 245 species determined. However, data on the distribution of fish species are not sufficiently provided for the whole area. This study was conducted from 2008 to 2011 at 27 stations from the Ba Che and Tien Yen river basins to determine the distribution of fish species according to different sections of the rivers, water bodies, seasons, and salinity levels. The results show that fish species are distributed mainly in the river (with 210 species), concentrated in the downstream area (with 213 species). Fishes are mainly collected in the dry season when the salinity level of river is high, due to seawater intrusion which also brings in 160 species of marine fish. This shows that fish distribution in the research areas is mainly dominated by the presence of marine species. While for freshwater fish, it is clearly affected by the mountainous features. Apart from the common characteristics sharing between the two river basins, but the number of both freshwater and marine fish species in the Tien Yen river are larger than those of Ba Che river, which is related to fresh water surface, river morphology, the width and location of the estuary to the sea. The downstream area is home to the fish species recorded in the Red Data Book of Vietnam and the complementary species for Vietnam, while the middle and upstream of the rivers may offer a high potential of biodiversity, with many possibly new species for science. These are important data for the conservation and sustainable development of fish resources in the Ba Che and Tien Yen river basins.

Designing a novel heterostructure AgInS₂@MIL-101(Cr) photocatalyst from PET plastic waste for tetracycline degradation

Semiconductor-containing porous materials with a well-defined structure could be unique scaffolds for carrying out selective organic transformations driven by visible light. We herein introduce for the first time a heterostructure of silver indium sulfide (AgInS(2)) ternary chalcogenide and a highly porous MIL-101(Cr) metal–organic framework (MOF) synthesised from polyethylene terephthalate plastic waste. Our results demonstrate that AgInS(2) nanoparticles were uniformly attached to each lattice plane of the octahedral MIL-101(Cr) structure, resulting in a nanocomposite with a high distribution of semiconductors in a porous media. We also demonstrate that the nanocomposite with up to 40% of AgInS(2) doping exhibited excellent catalytic activity for tetracycline degradation under visible light irradiation (∼99% tetracycline degraded after 4 h) and predominantly maintained its performance after five cycles. These results could promote a new material circularity pathway to develop new semiconductors that can be used to protect water from further pollution

ẢNH HƯỞNG CỦA NƯỚC BIỂN DÂNG ĐẾN THỦY TRIỀU KHU VỰC BIỂN MIỀN TRUNG CỦA VIỆT NAM

The tide is one of the most important phenomena in the ocean. In the world as well as in Vietnam, the tide was studied very early and great achievements have been recorded. However, under the impact of climate change and sea level rise, the local - to - regional - scale changes will cause significant changes in the coastal system. This paper gives some results of research on the tidal changes in the central region of Vietnam by using the hydrodynamic model and data analysing model. The simulation results of the tide in the central coast of Vietnam show that the tide can change both in the amplitude and phase distribution of the tidal constituents as M2, S2, K1 and O1. Specifically, the results of the average values of M2 are 0.1 m and 10.20; for S2 are 0.12 m and 12.50; for K1 are 0.2 m and 17.20; for O1 are 0.21 m and 20.20. Some results of this study showed that the most important contribution to the change of the tide in the region is the change of topography and the submerged areas.Thủy triều là một trong những hiện tượng quan trọng nhất trong đại dương. Trên thế giới cũng như ở Việt Nam, thủy triều được nghiên cứu từ rất sớm và đã đạt được nhiều thành tựu to lớn. Tuy nhiên, dưới tác động của biến đổi khí hậu và nước biển dâng, các quá trình có quy mô khu vực mang tính chất địa phương sẽ gây ra những thay đổi quan trọng trong các hệ thống ven biển. Bài báo này đưa ra một số kết quả nghiên cứu sự biến đổi của thủy triều trong khu vực biển miền Trung của Việt Nam. Nghiên cứu sử dụng phương pháp mô hình và phân tích điều hòa. Các kết quả mô phỏng về thủy triều trong khu vực biển miền Trung của Việt Nam cho thấy rằng thủy triều có sự biến đổi cả về biên độ và pha của các phân triều chính như M2, S2, K1 và O1. Cụ thể, kết quả giá trị trung bình đối với M2 là 0,1 m và 10,20; đối với S2 là 0,12 m và 12,50; đối với K1 là 0,2 m và 17,20; đối với O1 là 0,21 m và 20,20. Một số kết quả nghiên cứu này đã cho thấy rằng những đóng góp quan trọng nhất vào sự thay đổi của thủy triều trong khu vực là sự thay đổi địa hình và diện tích của thủy vực

The living microarray: a high-throughput platform for measuring transcription dynamics in single cells

<p>Abstract</p> <p>Background</p> <p>Current methods of measuring transcription in high-throughput have led to significant improvements in our knowledge of transcriptional regulation and Systems Biology. However, endpoint measurements obtained from methods that pool populations of cells are not amenable to studying time-dependent processes that show cell heterogeneity.</p> <p>Results</p> <p>Here we describe a high-throughput platform for measuring transcriptional changes in real time in single mammalian cells. By using reverse transfection microarrays we are able to transfect fluorescent reporter plasmids into 600 independent clusters of cells plated on a single microscope slide and image these clusters every 20 minutes. We use a fast-maturing, destabilized and nuclear-localized reporter that is suitable for automated segmentation to accurately measure promoter activity in single cells. We tested this platform with synthetic drug-inducible promoters that showed robust induction over 24 hours. Automated segmentation and tracking of over 11 million cell images during this period revealed that cells display substantial heterogeneity in their responses to the applied treatment, including a large proportion of transfected cells that do not respond at all.</p> <p>Conclusions</p> <p>The results from our single-cell analysis suggest that methods that measure average cellular responses, such as DNA microarrays, RT-PCR and chromatin immunoprecipitation, characterize a response skewed by a subset of cells in the population. Our method is scalable and readily adaptable to studying complex systems, including cell proliferation, differentiation and apoptosis.</p

Awareness and preparedness of healthcare workers against the first wave of the COVID-19 pandemic: A cross-sectional survey across 57 countries.

BACKGROUND: Since the COVID-19 pandemic began, there have been concerns related to the preparedness of healthcare workers (HCWs). This study aimed to describe the level of awareness and preparedness of hospital HCWs at the time of the first wave. METHODS: This multinational, multicenter, cross-sectional survey was conducted among hospital HCWs from February to May 2020. We used a hierarchical logistic regression multivariate analysis to adjust the influence of variables based on awareness and preparedness. We then used association rule mining to identify relationships between HCW confidence in handling suspected COVID-19 patients and prior COVID-19 case-management training. RESULTS: We surveyed 24,653 HCWs from 371 hospitals across 57 countries and received 17,302 responses from 70.2% HCWs overall. The median COVID-19 preparedness score was 11.0 (interquartile range [IQR] = 6.0-14.0) and the median awareness score was 29.6 (IQR = 26.6-32.6). HCWs at COVID-19 designated facilities with previous outbreak experience, or HCWs who were trained for dealing with the SARS-CoV-2 outbreak, had significantly higher levels of preparedness and awareness (p<0.001). Association rule mining suggests that nurses and doctors who had a 'great-extent-of-confidence' in handling suspected COVID-19 patients had participated in COVID-19 training courses. Male participants (mean difference = 0.34; 95% CI = 0.22, 0.46; p<0.001) and nurses (mean difference = 0.67; 95% CI = 0.53, 0.81; p<0.001) had higher preparedness scores compared to women participants and doctors. INTERPRETATION: There was an unsurprising high level of awareness and preparedness among HCWs who participated in COVID-19 training courses. However, disparity existed along the lines of gender and type of HCW. It is unknown whether the difference in COVID-19 preparedness that we detected early in the pandemic may have translated into disproportionate SARS-CoV-2 burden of disease by gender or HCW type

Gene Expression Profiles in Human and Mouse Primary Cells Provide New Insights into the Differential Actions of Vitamin D-3 Metabolites

1α,25-Dihydroxyvitamin D3 (1α,25(OH)2D3) had earlier been regarded as the only active hormone. The newly identified actions of 25-hydroxyvitamin D3 (25(OH)D3) and 24R,25-dihydroxyvitamin D3 (24R,25(OH)2D3) broadened the vitamin D3 endocrine system, however, the current data are fragmented and a systematic understanding is lacking. Here we performed the first systematic study of global gene expression to clarify their similarities and differences. Three metabolites at physiologically comparable levels were utilized to treat human and mouse fibroblasts prior to DNA microarray analyses. Human primary prostate stromal P29SN cells (hP29SN), which convert 25(OH)D3 into 1α,25(OH)2D3 by 1α-hydroxylase (encoded by the gene CYP27B1), displayed regulation of 164, 171, and 175 genes by treatment with 1α,25(OH)2D3, 25(OH)D3, and 24R,25(OH)2D3, respectively. Mouse primary Cyp27b1 knockout fibroblasts (mCyp27b1−/−), which lack 1α-hydroxylation, displayed regulation of 619, 469, and 66 genes using the same respective treatments. The number of shared genes regulated by two metabolites is much lower in hP29SN than in mCyp27b1−/−. By using DAVID Functional Annotation Bioinformatics Microarray Analysis tools and Ingenuity Pathways Analysis, we identified the agonistic regulation of calcium homeostasis and bone remodeling between 1α,25(OH)2D3 and 25(OH)D3 and unique non-classical actions of each metabolite in physiological and pathological processes, including cell cycle, keratinocyte differentiation, amyotrophic lateral sclerosis signaling, gene transcription, immunomodulation, epigenetics, cell differentiation, and membrane protein expression. In conclusion, there are three distinct vitamin D3 hormones with clearly different biological activities. This study presents a new conceptual insight into the vitamin D3 endocrine system, which may guide the strategic use of vitamin D3 in disease prevention and treatment.Peer reviewe

A multimodal cell census and atlas of the mammalian primary motor cortex

ABSTRACT We report the generation of a multimodal cell census and atlas of the mammalian primary motor cortex (MOp or M1) as the initial product of the BRAIN Initiative Cell Census Network (BICCN). This was achieved by coordinated large-scale analyses of single-cell transcriptomes, chromatin accessibility, DNA methylomes, spatially resolved single-cell transcriptomes, morphological and electrophysiological properties, and cellular resolution input-output mapping, integrated through cross-modal computational analysis. Together, our results advance the collective knowledge and understanding of brain cell type organization: First, our study reveals a unified molecular genetic landscape of cortical cell types that congruently integrates their transcriptome, open chromatin and DNA methylation maps. Second, cross-species analysis achieves a unified taxonomy of transcriptomic types and their hierarchical organization that are conserved from mouse to marmoset and human. Third, cross-modal analysis provides compelling evidence for the epigenomic, transcriptomic, and gene regulatory basis of neuronal phenotypes such as their physiological and anatomical properties, demonstrating the biological validity and genomic underpinning of neuron types and subtypes. Fourth, in situ single-cell transcriptomics provides a spatially-resolved cell type atlas of the motor cortex. Fifth, integrated transcriptomic, epigenomic and anatomical analyses reveal the correspondence between neural circuits and transcriptomic cell types. We further present an extensive genetic toolset for targeting and fate mapping glutamatergic projection neuron types toward linking their developmental trajectory to their circuit function. Together, our results establish a unified and mechanistic framework of neuronal cell type organization that integrates multi-layered molecular genetic and spatial information with multi-faceted phenotypic properties