Nonlinear dynamics of phase separation in thin films

We present a long-wavelength approximation to the Navier-Stokes Cahn-Hilliard equations to describe phase separation in thin films. The equations we derive underscore the coupled behaviour of free-surface variations and phase separation. We introduce a repulsive substrate-film interaction potential and analyse the resulting fourth-order equations by constructing a Lyapunov functional, which, combined with the regularizing repulsive potential, gives rise to a positive lower bound for the free-surface height. The value of this lower bound depends on the parameters of the problem, a result which we compare with numerical simulations. While the theoretical lower bound is an obstacle to the rupture of a film that initially is everywhere of finite height, it is not sufficiently sharp to represent accurately the parametric dependence of the observed dips or `valleys' in free-surface height. We observe these valleys across zones where the concentration of the binary mixture changes sharply, indicating the formation of bubbles. Finally, we carry out numerical simulations without the repulsive interaction, and find that the film ruptures in finite time, while the gradient of the Cahn--Hilliard concentration develops a singularity.Comment: 26 pages, 20 figures, PDFLaTeX with RevTeX4 macros. A thorough analysis of the equations is presented in arXiv:0805.103

Altered mitochondrial function and energy metabolism is associated with a radioresistant phenotype in oesophageal adenocarcinoma

Neoadjuvant chemoradiation therapy (CRT) is increasingly the standard of care for locally advanced oesophageal cancer. A complete pathological response to CRT is associated with a favourable outcome. Radiation therapy is important for local tumour control, however, radioresistance remains a substantial clinical problem. We hypothesise that alterations in mitochondrial function and energy metabolism are involved in the radioresistance of oesophageal adenocarcinoma (OAC). To investigate this, we used an established isogenic cell line model of radioresistant OAC. Radioresistant cells (OE33 R) demonstrated significantly increased levels of random mitochondrial mutations, which were coupled with alterations in mitochondrial function, size, morphology and gene expression, supporting a role for mitochondrial dysfunction in the radioresistance of this model. OE33 R cells also demonstrated altered bioenergetics, demonstrating significantly increased intracellular ATP levels, which was attributed to enhanced mitochondrial respiration. Radioresistant cells also demonstrated metabolic plasticity, efficiently switching between the glycolysis and oxidative phosphorylation energy metabolism pathways, which were accompanied by enhanced clonogenic survival. This data was supported in vivo, in pre-treatment OAC tumour tissue. Tumour ATP5B expression, a marker of oxidative phosphorylation, was significantly increased in patients who subsequently had a poor pathological response to neoadjuvant CRT. This suggests for the first time, a role for specific mitochondrial alterations and metabolic remodelling in the radioresistance of OAC

The First Galaxies: Clues from Element Abundances

It has recently become possible to measure directly the abundances of several chemical elements in a variety of environments at redshifts up to z = 5. In this review I summarise the latest observations of Lyman break galaxies, damped Lyman alpha systems and the Lyman alpha forest with a view to uncovering any clues which these data may offer to the first episodes of star formation. The picture which is emerging is one where the universe at z = 3 already included many of the components of today's galaxies--even at these early times we see evidence for Populations I and II stars, while the `smoking gun' for Population III objects may be hidden in the chemical composition of the lowest density regions of the IGM, yet to be deciphered.Comment: 15 pages, LaTex, 8 Postscript Figures. To appear in the Philosophical Transactions of The Royal Society, Series

On Collisionless Electron-Ion Temperature Equilibration in the Fast Solar Wind

We explore a mechanism, entirely new to the fast solar wind, of electron heating by lower hybrid waves to explain the shift to higher charge states observed in various elements in the fast wind at 1 A.U. relative to the original coronal hole plasma. This process is a variation on that previously discussed for two temperature accretion flows by Begelman & Chiueh. Lower hybrid waves are generated by gyrating minor ions (mainly alpha-particles) and become significant once strong ion cyclotron heating sets in beyond 1.5 R_sun. In this way the model avoids conflict with SUMER electron temperature diagnostic measurements between 1 and 1.5 R_sun. The principal requirement for such a process to work is the existence of density gradients in the fast solar wind, with scale length of similar order to the proton inertial length. Similar size structures have previously been inferred by other authors from radio scintillation observations and considerations of ion cyclotron wave generation by global resonant MHD waves.Comment: 32 pages including 11 figures, 4 tables, accepted by Ap

Long-term interleukin-6 levels and subsequent risk of coronary heart disease: Two new prospective studies and a systematic review

Background The relevance to coronary heart disease (CHD) of cytokines that govern inflammatory cascades, such as interleukin-6 (IL-6), may be underestimated because such mediators are short acting and prone to fluctuations. We evaluated associations of long-term circulating IL-6 levels with CHD risk (defined as nonfatal myocardial infarction [MI] or fatal CHD) in two population-based cohorts, involving serial measurements to enable correction for within-person variability. We updated a systematic review to put the new findings in context. Methods and Findings Measurements were made in samples obtained at baseline from 2,138 patients who had a first-ever nonfatal MI or died of CHD during follow-up, and from 4,267 controls in two cohorts comprising 24,230 participants. Correction for within-person variability was made using data from repeat measurements taken several years apart in several hundred participants. The year-to-year variability of IL-6 values within individuals was relatively high (regression dilution ratios of 0.41, 95% confidence interval [CI] 0.28-0.53, over 4 y, and 0.35, 95% CI 0.23-0.48, over 12 y). Ignoring this variability, we found an odds ratio for CHD, adjusted for several established risk factors, of 1.46 (95% CI 1.29-1.65) per 2 standard deviation (SD) increase of baseline IL-6 values, similar to that for baseline C-reactive protein. After correction for within-person variability, the odds ratio for CHD was 2.14 (95% CI 1.45-3.15) with long-term average ("usual'') IL-6, similar to those for some established risk factors. Increasing IL-6 levels were associated with progressively increasing CHD risk. An updated systematic review of electronic databases and other sources identified 15 relevant previous population-based prospective studies of IL-6 and clinical coronary outcomes (i.e., MI or coronary death). Including the two current studies, the 17 available prospective studies gave a combined odds ratio of 1.61 (95% CI 1.42-1.83) per 2 SD increase in baseline IL-6 (corresponding to an odds ratio of 3.34 [95% CI 2.45-4.56] per 2 SD increase in usual [long-term average] IL-6 levels). Conclusions Long-term IL-6 levels are associated with CHD risk about as strongly as are some major established risk factors, but causality remains uncertain. These findings highlight the potential relevance of IL-6-mediated pathways to CH

Intein Inhibitors as Novel Antimicrobials: Protein Splicing in Human Pathogens, Screening Methods, and Off-target Considerations

Protein splicing is a post-translational process by which an intervening polypeptide, or intein, catalyzes its own removal from the flanking polypeptides, or exteins, concomitant with extein ligation. Although inteins are highly abundant in the microbial world, including within several human pathogens, they are absent in the genomes of metazoans. As protein splicing is required to permit function of essential proteins within pathogens, inteins represent attractive antimicrobial targets. Here we review key proteins interrupted by inteins in pathogenic mycobacteria and fungi, exciting discoveries that provide proof of concept that intein activity can be inhibited and that this inhibition has an effect on the host organism’s fitness, and bioanalytical methods that have been used to screen for intein activity. We also consider potential off-target inhibition of hedgehog signaling, given the similarity in structure and function of inteins and hedgehog autoprocessing domains

Soil ecosystem services of the under different uses in the Colombian Amazonia

Agroforestry systems (AFs), where agricultural and livestock crops are associated with woody plants, are known as sustainable systems, that conserve biodiversity and improve the provision of ecosystem services without compromising productivity. This work focuses mainly on cacao AFs, which have been related to different ecosystem services in tropical regions. Especially, our study focuses on the ability of the cacao AFs to improve soil ecosystem services in the Colombian Amazon region. We focused on soil ecosystems ecosystem services in the Colombian Amazonia because: of the social importance of cacao production system in the study region, specifically within the post conflict context; the lack of knowledge on the capacity of cacao AFs to offer soil ecosystem services in the study zone and its capacity in restoring ecosystem services in degraded soils. Aim The objective of our work was to evaluate the soil quality in different cacao agroforestry systems in the Colombian Amazonia, and to compare these evaluated soil quality of soil quality in Forest and Pasture. Material and methods The study was conducted at the Macagual Amazon Research Center, located west of the Colombian Amazon. We evaluated soil quality in four types of AFs Cacao, presenting different establishment, composition and structural characteristics; but also in a plot of native forest composed of characteristic species of the area, and in a plot of pasture composed of grasses. In the different plot of each land use, we evaluated the diversity of macrofauna, the morphology of aggregate, the physical properties and the soil chemistry. We summarized these variables in a General Indicator of Soil Quality GISQ, characterizing soil quality in the different land uses. Major results and Conclusion It was found that the level of intensification among land uses (Bosque>AFs>Pasture) affects the decrease of the macrofauna populations, which was related to soil compaction (physical properties). Chemical fertility improved with the establishment of AFs influenced by the application of amendments and organic fertilizers. When establishing agroforestry systems from pasture areas at a certain level of degradation, the GISQ scale was found to increase by 42%. Our results indicate that AFs practices can definitely be used as a restoration strategy, for the recovery of degraded areas