Tree spatial pattern within the forest–tundra ecotone: a comparison of sites across Canada

Accepted VersionAlthough many studies have focused on factors influencing treeline advance with climate change, less consideration has been given to potential changes in tree spatial pattern across the forest–tundra ecotone. We investigated trends in spatial pattern across the forest–tundra ecotone and geographical variation in the Yukon, Manitoba, and Labrador, Canada. Tree cover was measured in contiguous quadrats along transects up to 100 m long located in Forest, Ecotone, and Tundra sections across the forest–tundra transition. Spatial patterns were analyzed using new local variance to estimate patch size and wavelet analysis to determine the scale and amount of aggregation. Compared with the Forest, tree cover in the Ecotone was less aggregated at most sites, with fewer smaller patches of trees. We found evidence that shorter trees may be clumped at some sites, perhaps due to shelter from the wind, and we found little support for regular spacing that would indicate competition. With climate change, trees in the Ecotone will likely become more aggregated as patches enlarge and new patches establish. However, results were site-specific, varying with aspect and the presence of krummholz (stunted trees); therefore, strategies for adaptation of communities to climate change in Canada’s subarctic forest would need to reflect these differences

Climate sensitivity of shrub growth across the tundra biome

The tundra biome is experiencing rapid temperature increases that have been linked to a shift in tundra vegetation composition towards greater shrub dominance. Shrub expansion can amplify warming by altering the surface albedo, energy and water balance, and permafrost temperatures. To account for these feedbacks, global climate models must include realistic projections of vegetation dynamics, and in particular tundra shrub expansion, yet the mechanisms driving shrub expansion remain poorly understood. Dendroecological data consisting of multi-decadal time series of annual growth of shrub species provide a previously untapped resource to explore climate-growth relationships across the tundra biome. We analysed a dataset of approximately 42,000 annual growth records from 1821 individuals, comprising 25 species from eight genera, from 37 arctic and alpine sites. Our analyses demonstrate that the sensitivity of shrub growth to climate was (1) heterogeneous across the tundra biome, (2) greater at sites with higher soil moisture and (3) strongest for taller shrub species growing at the northern or upper elevational edge of their range. Across latitudinal gradients in the Arctic, climate sensitivity of growth was greatest at the boundary between low- and high-arctic vegetation zones, where permafrost conditions are changing and the majority of the global permafrost soil carbon pool is stored. Thus, in order to more accurately estimate feedbacks among shrub change, albedo, permafrost thaw, carbon storage and climate, the observed variation in climate-growth relationships of shrub species across the tundra biome will need to be incorporated into earth system models.JRC.H.3-Forest Resources and Climat

Reproduction as a bottleneck to treeline advance across the circumarctic forest tundra ecotone

Published versionThe fundamental niche of many species is shifting with climate change, especially in sub-arctic ecosystems with pronounced recent warming. Ongoing warming in sub-arctic regions should lessen environmental constraints on tree growth and reproduction, leading to increased success of trees colonizing tundra. Nevertheless, variable responses of treeline ecotones have been documented in association with warming temperatures. One explanation for time lags between increasingly favourable environmental conditions and treeline ecotone movement is reproductive limitations caused by low seed availability. Our objective was to assess the reproductive constraints of the dominant tree species at the treeline ecotone in the circumpolar north. We sampled reproductive structures of trees (cones and catkins) and stand attributes across circumarctic treeline ecotones. We used generalized linear mixed models to estimate the sensitivity of seed production and the availability of viable seed to regional climate, stand structure, and species-specific characteristics. Both seed production and viability of available seed were strongly driven by specific, sequential seasonal climatic conditions, but in different ways. Seed production was greatest when growing seasons with more growing degree days coincided with years with high precipitation. Two consecutive years with more growing degree days and low precipitation resulted in low seed production. Seasonal climate effects on the viability of available seed depended on the physical characteristics of the reproductive structures. Large-coned and -seeded species take more time to develop mature embryos and were therefore more sensitive to increases in growing degree days in the year of flowering and embryo development. Our findings suggest that both moisture stress and abbreviated growing seasons can have a notable negative influence on the production and viability of available seed at treeline. Our synthesis revealed that constraints on pre-dispersal reproduction within the treeline ecotone might create a considerable time lag for range expansion of tree populations into tundra ecosystems

Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish

© The Authors, 2010. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Genomics 11 (2010): 643, doi:10.1186/1471-2164-11-643.Increasing use of zebrafish in drug discovery and mechanistic toxicology demands knowledge of cytochrome P450 (CYP) gene regulation and function. CYP enzymes catalyze oxidative transformation leading to activation or inactivation of many endogenous and exogenous chemicals, with consequences for normal physiology and disease processes. Many CYPs potentially have roles in developmental specification, and many chemicals that cause developmental abnormalities are substrates for CYPs. Here we identify and annotate the full suite of CYP genes in zebrafish, compare these to the human CYP gene complement, and determine the expression of CYP genes during normal development. Zebrafish have a total of 94 CYP genes, distributed among 18 gene families found also in mammals. There are 32 genes in CYP families 5 to 51, most of which are direct orthologs of human CYPs that are involved in endogenous functions including synthesis or inactivation of regulatory molecules. The high degree of sequence similarity suggests conservation of enzyme activities for these CYPs, confirmed in reports for some steroidogenic enzymes (e.g. CYP19, aromatase; CYP11A, P450scc; CYP17, steroid 17a-hydroxylase), and the CYP26 retinoic acid hydroxylases. Complexity is much greater in gene families 1, 2, and 3, which include CYPs prominent in metabolism of drugs and pollutants, as well as of endogenous substrates. There are orthologous relationships for some CYP1 s and some CYP3 s between zebrafish and human. In contrast, zebrafish have 47 CYP2 genes, compared to 16 in human, with only two (CYP2R1 and CYP2U1) recognized as orthologous based on sequence. Analysis of shared synteny identified CYP2 gene clusters evolutionarily related to mammalian CYP2 s, as well as unique clusters. Transcript profiling by microarray and quantitative PCR revealed that the majority of zebrafish CYP genes are expressed in embryos, with waves of expression of different sets of genes over the course of development. Transcripts of some CYP occur also in oocytes. The results provide a foundation for the use of zebrafish as a model in toxicological, pharmacological and chemical disease research.This work was supported by NIH grants R01ES015912 and P42ES007381 (Superfund Basic Research Program at Boston University) (to JJS). MEJ was a Guest Investigator at the Woods Hole Oceanographic Institution (WHOI) and was supported by grants from the Swedish research council Formas and Carl Trygger's foundation. AK was a Post-doctoral Fellow at WHOI, and was supported by a fellowship from the Japanese Society for Promotion of Science (JSPS). JZ and TP were Guest Students at the WHOI and were supported by a CAPES Ph.D. Fellowship and CNPq Ph.D. Sandwich Fellowship (JZ), and by a CNPq Ph.D. Fellowship (TP), from Brazil

Plant traits poorly predict winner and loser shrub species in a warming tundra biome

Climate change is leading to species redistributions. In the tundra biome, shrubs are generally expanding, but not all tundra shrub species will benefit from warming. Winner and loser species, and the characteristics that may determine success or failure, have not yet been fully identified. Here, we investigate whether past abundance changes, current range sizes and projected range shifts derived from species distribution models are related to plant trait values and intraspecific trait variation. We combined 17,921 trait records with observed past and modelled future distributions from 62 tundra shrub species across three continents. We found that species with greater variation in seed mass and specific leaf area had larger projected range shifts, and projected winner species had greater seed mass values. However, trait values and variation were not consistently related to current and projected ranges, nor to past abundance change. Overall, our findings indicate that abundance change and range shifts will not lead to directional modifications in shrub trait composition, since winner and loser species share relatively similar trait spaces

Reproduction as a bottleneck to treeline advance across the circumarctic forest tundra ecotone

The fundamental niche of many species is shifting with climate change, especially in sub-arctic ecosystems with pronounced recent warming. Ongoing warming in sub-arctic regions should lessen environmental constraints on tree growth and reproduction, leading to increased success of trees colonising tundra. Nevertheless, variable responses of treeline ecotones have been documented in association with warming temperatures. One explanation for time lags between increasingly favourable environmental conditions and treeline ecotone movement is reproductive limitations caused by low seed availability. Our objective was to assess the reproductive constraints of the dominant tree species at the treeline ecotone in the circumpolar north. We sampled reproductive structures of trees (cones and catkins) and stand attributes across circumarctic treeline ecotones. We used generalized linear mixed models to estimate the sensitivity of seed production and the availability of viable seed to regional climate, stand structure, and species-specific characteristics. Both seed production and viability of available seed were strongly driven by specific, sequential seasonal climatic conditions, but in different ways. Seed production was greatest when growing seasons with more growing degree days coincided with years with high precipitation. Two consecutive years with more growing degree days and low precipitation resulted in low seed production. Seasonal climate effects on the viability of available seed depended on the physical characteristics of the reproductive structures. Large-coned and -seeded species take more time to develop mature embryos and were therefore more sensitive to increases in growing degree days in the year of flowering and embryo development. Our findings suggest that both moisture stress and abbreviated growing seasons can have a notable negative influence on the production and viability of available seed at treeline. Our synthesis revealed that constraints on predispersal reproduction within the treeline ecotone might create a considerable time lag for range expansion of tree populations into tundra ecosystems. biotic interactions, climate change, range expansion, seed production, seed viability, sexual reproduction, species distribution, sub-arcti

High-affinity and selective detection of pyrophosphate in water by a resorcinarene salt receptor

Pyrophosphate (PPi) is a byproduct of DNA and RNA synthesis, and abnormal levels are indicative of disease. We report the high-affinity binding of PPi in water by N-alkyl ammonium resorcinarene chloride receptors. Experimental analysis using 1H and 31P NMR, isothermal titration calorimetry, mass spectrometry, and UV-vis spectroscopy all support exceptional selectivity of these systems for PPi in water. The measured affinity of K1 = 1.60 × 107 M−1 for PPi is three orders of magnitude larger than that observed for binding to another phosphate, ATP. This exceptional anion-binding affinity in water is explored through a detailed density functional theory computational study. These systems provide a promising avenue for the development of future innovative medical diagnostic tools.peerReviewe

Complex Changes in Plant Communities across a Subarctic Alpine Tree Line in Labrador, Canada + Supplementary Appendix Table (See Article Tools)

As climate warms, abiotic factors, as well as plant community and biodiversity structure, may constrain or promote the movement of ecotone boundaries. Our study sought to examine how plant communities change across the tree-line ecotone of the Mealy Mountains in Labrador, Canada. We established eight transects (50–100 m in length) along an elevation gradient in three tree-line zones (forest, forest-tundra, and alpine-tundra) and recorded all species and cover of vegetation in contiguous 1 × 1 m quadrats. Companion abiotic parameters of nutrients and soil temperature were also measured. The absence of abrupt changes in important soil nutrients and growing season temperatures suggests that these factors do not limit tree species establishment beyond the current tree line. Vegetation cover and richness, however, were highly variable and in some cases changed non-linearly across the tree-line ecotone. Tree cover and species density generally decreased with elevation, while some field layer species (< 25 cm in height) increased; the latter change seems to be influenced by ground shrubs rather than herbaceous species. As expected, transects separated by the greatest difference in elevation were the least similar (higher beta diversity/species turnover); however, species turnover between the forest and forest-tundra transects was higher than it was between forest-tundra and alpine-tundra transects, even though the latter were separated by a greater elevation. Community structure and species turnover vary greatly across a tree line with the greatest differences between the forest and the forest-tundra, suggesting a biotic or abiotic barrier. While our ability to predict how the tree line will respond to continued climate change is complicated by these patterns in plant communities, the potential barriers investigated and others identified will be a useful focus for future studies. Au fur et à mesure que le climat se réchauffe, les facteurs abiotiques de même que la structure des communautés végétales et de la biodiversité pourraient contraindre ou promouvoir le mouvement des délimitations des écotones. Notre étude cherche à examiner comment les communautés de plantes changent dans l’écotone de la limite forestière des montagnes Mealy au Labrador, Canada. Nous avons établi huit transects (de 50 à 100 m de longueur) le long d’un gradient d’altitude chevauchant trois zones de la limite forestière (forêt, toundra forestière et toundra alpine), puis répertorié toutes les espèces et la couverture végétale se trouvant dans des quadrats contigus d’un mètre sur un mètre. Nous avons également mesuré les paramètres abiotiques des éléments nutritifs et des températures du sol connexes. L’absence de changements abrupts en ce qui a trait aux importants éléments nutritifs du sol et aux températures de la période de croissance suggère que ces facteurs ne limitent pas l’établissement des espèces d’arbres au-delà de la limite forestière actuelle. Cependant, la couverture végétale et sa richesse variaient beaucoup et, dans certains cas, changeaient de façon non linéaire dans l’écotone de la limite forestière. De manière générale, le couvert arboré et la densité des espèces diminuaient avec l’altitude, tandis que certaines espèces de la couverture vivante au-dessus du sol (< 25 cm de hauteur) augmentaient. Ce dernier changement semble influencé par le couvert arbustif et non pas par les espèces herbacées. Comme nous nous y attendions, les transects qui étaient séparés par la plus grande différence d’altitude étaient les moins semblables (plus grande diversité bêta et plus grand renouvellement des espèces). Cependant, le renouvellement des espèces entre le transect de la forêt et le transect de la toundra forestière était plus grand qu’entre les transects de la toundra forestière et de la toundra alpine, même si ces derniers étaient séparés par de plus grandes élévations. La structure des communautés et le renouvellement des espèces varient beaucoup au sein d’une limite forestière, les plus grandes différences étant enregistrées entre la forêt et la toundra forestière, ce qui suggère une barrière biotique ou abiotique. Bien que notre aptitude à prévoir comment la limite forestière réagira au changement climatique continu soit embrouillée par les modèles de communautés végétales, les barrières potentielles faisant l’objet d’études et d’autres barrières joueront un rôle important dans des études ultérieures

Biotic and abiotic drivers of tree seedling recruitment across an alpine treeline ecotone

Treeline responses to climate change ultimately depend on successful seedling recruitment, which requires dispersal of viable seeds and establishment of individual propagules in novel environments. In this study, we evaluated the effects of several abiotic and biotic drivers of early tree seedling recruitment across an alpine treeline ecotone. In two consecutive years, we sowed seeds of low- and high-elevation provenances of Larix decidua (European larch) and Picea abies (Norway spruce) below, at, and above the current treeline into intact vegetation and into open microsites with artificially removed surface vegetation, as well as into plots protected from seed predators and herbivores. Seedling emergence and early establishment in treatment and in control plots were monitored over two years. Tree seedling emergence occurred at and several hundred metres above the current treeline when viable seeds and suitable microsites for germination were available. However, dense vegetation cover at lower elevations and winter mortality at higher elevations particularly limited early recruitment. Post-dispersal predation, species, and provenance also affected emergence and early establishment. This study demonstrates the importance of understanding multiple abiotic and biotic drivers of early seedling recruitment that should be incorporated into predictions of treeline dynamics under climate change.ISSN:2045-232

Data from: Reproduction as a bottleneck to treeline advance across the circumarctic forest tundra ecotone

The fundamental niche of many species is shifting with climate change, especially in sub-arctic ecosystems with pronounced recent warming. Ongoing warming in sub-arctic regions should lessen environmental constraints on tree growth and reproduction, leading to increased success of trees colonising tundra. Nevertheless, variable responses of treeline ecotones have been documented in association with warming temperatures. One explanation for time lags between increasingly favourable environmental conditions and treeline ecotone movement is reproductive limitations caused by low seed availability. Our objective was to assess the reproductive constraints of the dominant tree species at the treeline ecotone in the circumpolar north. We sampled reproductive structures of trees (cones and catkins) and stand attributes across circumarctic treeline ecotones. We used generalized linear mixed models to estimate the sensitivity of seed production and the availability of viable seed to regional climate, stand structure, and species-specific characteristics. Both seed production and viability of available seed were strongly driven by specific, sequential seasonal climatic conditions, but in different ways. Seed production was greatest when growing seasons with more growing degree days coincided with years with high precipitation. Two consecutive years with more growing degree days and low precipitation resulted in low seed production. Seasonal climate effects on the viability of available seed depended on the physical characteristics of the reproductive structures. Large-coned and -seeded species take more time to develop mature embryos and were therefore more sensitive to increases in growing degree days in the year of flowering and embryo development. Our findings suggest that both moisture stress and abbreviated growing seasons can have a notable negative influence on the production and viability of available seed at treeline. Our synthesis revealed that constraints on predispersal reproduction within the treeline ecotone might create a considerable time lag for range expansion of tree populations into tundra ecosystems