One-note samba: the biogeographical history of the relict Brazilian butterfly Elkalyce cogina

[Aim] Biogeographically puzzling taxa represent an opportunity to understand the processes that have shaped current species distributions. The systematic placement and biogeographical history of Elkalyce cogina, a small lycaenid butterfly endemic to Brazil and neighbouring Argentina, are long-standing puzzles. We use molecular tools and novel biogeographical and life history data to clarify the taxonomy and distribution of this butterfly.[Location] South America, with emphasis on the Atlantic Rain Forest and Cerrado biomes (Brazil and Argentina).[Methods] We gathered a data set of 71 Polyommatini (Lycaenidae) samples, including representatives of all described subtribes and/or sections. Among these, we contributed new sequences for E. cogina and four additional relevant taxa in the target subtribes Everina, Lycaenopsina and Polyommatina. We inferred a molecular phylogeny based on three mitochondrial genes and four nuclear markers to assess the systematic position and time of divergence of E. cogina. Ancestral geographical ranges were estimated with the R package BioGeoBEARS. To investigate heterogeneity in clade diversification rates, we used Bayesian analysis of macroevolutionary mixtures (bamm).[Results] Our results confirm the hypothesis that E. cogina belongs to the subtribe Everina and not Lycaenopsina, but unexpectedly recovered it as the sister group to the rest of Everina, with an estimated divergence time of approximately 10 Ma. Ancestral geographical range reconstruction points to an old colonization from Asia, the centre of diversity for the Everina, to the New World. The Neotropical Polyommatina lineage diversified to produce almost 100 species in multiple genera, whereas the E. cogina lineage did not diversify at all. Such lack of diversification is unique among the seven Everina/Polyommatina lineages that colonized the New World. We also show that the larvae of E. cogina feed on Fabaceae, supporting the identification of this host-plant family as the ancestral state for the whole group.[Main conclusions] The age and biogeographical reconstruction of the Elkalyce lineage are similar to those of the Neotropical lineage of Polyommatina and suggest that both travelled via the route proposed by Vladimir Nabokov (Asia-Beringia-North America-South America). This coincidence suggests that the climatic conditions at c. 10 Ma favoured dispersal from Asia to the Neotropics and that later events may have erased traces of these butterfly lineages in North America.Funding was provided by the Spanish Ministerio de Economía y Competitividad (project CGL2013-48277-P). G.T. is supported by the grant BP-A00275 (AGAUR-Generalitat de Catalunya), Marie Curie Actions FP7-PEOPLE-2013-IOF (project 622716) and the grant 1.50.1617.2013 at Saint Petersburg State University; L.A.K. was supported by CAPES (3200-14-0); A.V.L.F. thanks ICMBio for research permits (SISBIO no. 10802-5), CNPq (fellowship 302585/2011-7 and grant 564954/2010-1), RedeLep-SISBIOTA-Brasil/CNPq (563332/2010-7), the National Science Foundation (DEB-1256742), BR-BoL (MCT/CNPq/FNDCT 50/2010) and FAPESP (grant 2012/50260-6 and BIOTA-FAPESP Programs 2011/50225-3 and 2013/50297-0).Peer Reviewe

Two ways to be endemic. Alps and Apennines are different functional refugia during climatic cycles

Endemics co-occur because they evolved in situ and persist regionally or because they evolved ex situ and later dispersed to shared habitats, generating evolutionary or ecological endemicity centres, respectively. We investigate whether different endemicity centres can intertwine in the region ranging from Alps to Sicily, by studying their butterfly fauna. We gathered an extensive occurrence data set for butterflies of the study area (27,123 records, 269 species, in cells of 0.5 × 0.5 degrees of latitude-longitude). We applied molecular-based delimitation methods (GMYC model) to 26,557 cytochrome c oxidase subunit 1 (COI) sequences of Western Palearctic butterflies. We identified entities based on molecular delimitations and/or the checklist of European butterflies and objectively attributed occurrences to their most probable entity. We obtained a zoogeographic regionalisation based on the 69 endemics of the area. Using phylogenetic ANOVA we tested if endemics from different centres differ from each other and from nonendemics for key ecological traits and divergence time. Endemicity showed high incidence in the Alps and Southern Italy. The regionalisation separated the Alps from the Italian Peninsula and Sicily. The endemics of different centres showed a high turnover and differed in phylogenetic distances, phenology and distribution traits. Endemics are on average younger than nonendemics and the Peninsula-Sicily endemics also have lower variance in divergence than those from the Alps. The observed variation identifies Alpine endemics as paleoendemics, now occupying an ecological centre, and the Peninsula-Sicily ones as neoendemics, that diverged in the region since the Pleistocene. The results challenge the common view of the Alpine-Apennine area as a single “Italian refugium”

Isospin breaking corrections to low-energy pi-K scattering

We evaluate the matrix elements for the processes pi^0 K^0 -> pi^0 K^0 and pi^- K^+ -> pi^0 K^0 in the presence of isospin breaking terms at leading and next-to-leading order. As a direct application the releveant combination of the S-wave scattering lengths involved in the pion-kaon atom lifetime is determined. We discuss the sensitivity of the results with respect to the input parameters.Comment: 33 pages, plain latex, 2 figure

Discovery of the magnetic field in the pulsating B star beta Cephei

Although the star itself is not He enriched, the periodicity and the variability in the UV wind lines of the pulsating B1 IV star beta Cep are similar to what is observed in magnetic He-peculiar B stars, suggesting that beta Cep is magnetic. We searched for a magnetic field using spectropolarimetry. From UV spectroscopy, we analysed the wind variability and investigated the correlation with the magnetic data. Using 130 time-resolved circular polarisation spectra, obtained with the MuSiCoS spectropolarimeter at the 2m TBL from 1998 until 2005, we applied the least-squares deconvolution method on the Stokes V spectra and derived the longitudinal component of the integrated magnetic field over the visible hemisphere of the star. We performed a period analysis on the magnetic data and on EW measurements of UV wind lines obtained over 17 years. We also analysed the short- and long-term radial velocity variations, which are due to the pulsations and the 90-year binary motion. beta Cep hosts a sinusoidally varying magnetic field with an amplitude 97(4) G and an average value -6(3) G. From the UV wind line variability, we derive a period of 12.00075(11) days, which is the rotation period of the star, and is compatible with the observed magnetic modulation. Phases of maximum and minimum field match those of maximum emission in the UV wind lines, strongly supporting an oblique magnetic-rotator model. We discuss the magnetic behaviour as a function of pulsation behaviour and UV line variability. This paper presents the analysis of the first confirmed detection of a dipolar magnetic field in an upper main-sequence pulsating star. Maximum wind absorption originates in the magnetic equatorial plane. Maximum emission occurs when the magnetic north pole points to the Earth. Radial velocities agree with the ~90-y orbit around its Be-star binary companion.Comment: 14 pages, 10 figures, 5 table

Chiral drag force

We provide a holographic evaluation of novel contributions to the drag force acting on a heavy quark moving through strongly interacting plasma. The new contributions are chiral in that they act in opposite directions in plasmas containing an excess of left- or right-handed quarks and in that they are proportional to the coefficient of the axial anomaly. These new contributions to the drag force act either parallel to or antiparallel to an external magnetic field or to the vorticity of the fluid plasma. In all these respects, these contributions to the drag force felt by a heavy quark are analogous to the chiral magnetic effect on light quarks. However, the new contribution to the drag force is independent of the electric charge of the heavy quark and is the same for heavy quarks and antiquarks. We show that although the chiral drag force can be non-vanishing for heavy quarks that are at rest in the local fluid rest frame, it does vanish for heavy quarks that are at rest in a suitably chosen frame. In this frame, the heavy quark at rest sees counterpropagating momentum and charge currents, both proportional to the axial anomaly coefficient, but feels no drag force. This provides strong concrete evidence for the absence of dissipation in chiral transport, something that has been predicted previously via consideration of symmetries. Along the way to our principal results, we provide a general calculation of the corrections to the drag force due to the presence of gradients in the flowing fluid in the presence of a nonzero chemical potential. We close with a consequence of our result that is at least in principle observable in heavy ion collisions, namely an anticorrelation between the direction of the CME current for light quarks in a given event and the direction of the kick given to the momentum of all the heavy quarks and antiquarks in that event.Comment: 28 pages, small improvement to the discussion of gravitational anomaly, references adde

Deriving a mutation index of carcinogenicity using protein structure and protein interfaces

With the advent of Next Generation Sequencing the identification of mutations in the genomes of healthy and diseased tissues has become commonplace. While much progress has been made to elucidate the aetiology of disease processes in cancer, the contributions to disease that many individual mutations make remain to be characterised and their downstream consequences on cancer phenotypes remain to be understood. Missense mutations commonly occur in cancers and their consequences remain challenging to predict. However, this knowledge is becoming more vital, for both assessing disease progression and for stratifying drug treatment regimes. Coupled with structural data, comprehensive genomic databases of mutations such as the 1000 Genomes project and COSMIC give an opportunity to investigate general principles of how cancer mutations disrupt proteins and their interactions at the molecular and network level. We describe a comprehensive comparison of cancer and neutral missense mutations; by combining features derived from structural and interface properties we have developed a carcinogenicity predictor, InCa (Index of Carcinogenicity). Upon comparison with other methods, we observe that InCa can predict mutations that might not be detected by other methods. We also discuss general limitations shared by all predictors that attempt to predict driver mutations and discuss how this could impact high-throughput predictions. A web interface to a server implementation is publicly available at http://inca.icr.ac.uk/

ππ\pi\pi Scattering in Three Flavour ChPT

We present the scattering lengths for the $\pi\pi$ processes in the three flavour Chiral Perturbation Theory (ChPT) framework at next-to-next-to-leading order. We then combine this calculation with the determination of the parameters from $K_{e4}$ and the masses and decay constants and compare with the results of a dispersive analysis of $\pi\pi$ scattering. The comparison indicates a small but nonzero value for the $1/N_c$ suppressed NLO low energy constants $L_4^r$ and $L_6^r$.Comment: 30 page

Genes Suggest Ancestral Colour Polymorphisms Are Shared across Morphologically Cryptic Species in Arctic Bumblebees

email Suzanne orcd idCopyright: © 2015 Williams et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

I–II Loop Structural Determinants in the Gating and Surface Expression of Low Voltage-Activated Calcium Channels

The intracellular loops that interlink the four transmembrane domains of Ca2+- and Na+-channels (Cav, Nav) have critical roles in numerous forms of channel regulation. In particular, the intracellular loop that joins repeats I and II (I–II loop) in high voltage-activated (HVA) Ca2+ channels possesses the binding site for Cavβ subunits and plays significant roles in channel function, including trafficking the α1 subunits of HVA channels to the plasma membrane and channel gating. Although there is considerable divergence in the primary sequence of the I–II loop of Cav1/Cav2 HVA channels and Cav3 LVA/T-type channels, evidence for a regulatory role of the I–II loop in T-channel function has recently emerged for Cav3.2 channels. In order to provide a comprehensive view of the role this intracellular region may play in the gating and surface expression in Cav3 channels, we have performed a structure-function analysis of the I–II loop in Cav3.1 and Cav3.3 channels using selective deletion mutants. Here we show the first 60 amino acids of the loop (post IS6) are involved in Cav3.1 and Cav3.3 channel gating and kinetics, which establishes a conserved property of this locus for all Cav3 channels. In contrast to findings in Cav3.2, deletion of the central region of the I–II loop in Cav3.1 and Cav3.3 yielded a modest increase (+30%) and a reduction (−30%) in current density and surface expression, respectively. These experiments enrich our understanding of the structural determinants involved in Cav3 function by highlighting the unique role played by the intracellular I–II loop in Cav3.2 channel trafficking, and illustrating the prominent role of the gating brake in setting the slow and distinctive slow activation kinetics of Cav3.3

Identification and Characterisation of a Novel Acylpeptide Hydrolase from Sulfolobus Solfataricus: Structural and Functional Insights

A novel acylpeptide hydrolase, named APEH-3Ss, was isolated from the hypertermophilic archaeon Sulfolobus solfataricus. APEH is a member of the prolyl oligopeptidase family which catalyzes the removal of acetylated amino acid residues from the N terminus of oligopeptides. The purified enzyme shows a homotrimeric structure, unique among the associate partners of the APEH cluster and, in contrast to the archaeal APEHs which show both exo/endo peptidase activities, it appears to be a “true” aminopeptidase as exemplified by its mammalian counterparts, with which it shares a similar substrate specificity. Furthermore, a comparative study on the regulation of apeh gene expression, revealed a significant but divergent alteration in the expression pattern of apeh-3Ss and apehSs (the gene encoding the previously identified APEHSs from S. solfataricus), which is induced in response to various stressful growth conditions. Hence, both APEH enzymes can be defined as stress-regulated proteins which play a complementary role in enabling the survival of S. solfataricus cells under different conditions. These results provide new structural and functional insights into S. solfataricus APEH, offering a possible explanation for the multiplicity of this enzyme in Archaea