A database of freshwater fish species of the Amazon Basin

The Amazon Basin is an unquestionable biodiversity hotspot, containing the highest freshwater biodiversity on earth and facing off a recent increase in anthropogenic threats. The current knowledge on the spatial distribution of the freshwater fish species is greatly deficient in this basin, preventing a comprehensive understanding of this hyper-diverse ecosystem as a whole. Filling this gap was the priority of a transnational collaborative project, i.e. the AmazonFish project - https://www.amazon-fish.com/. Relying on the outputs of this project, we provide the most complete fish species distribution records covering the whole Amazon drainage. The database, including 2,406 validated freshwater native fish species, 232,936 georeferenced records, results from an extensive survey of species distribution including 590 different sources (e.g. published articles, grey literature, online biodiversity databases and scientific collections from museums and universities worldwide) and field expeditions conducted during the project. This database, delivered at both georeferenced localities (21,500 localities) and sub-drainages grains (144 units), represents a highly valuable source of information for further studies on freshwater fish biodiversity, biogeography and conservation

Temporal and spatial distribution of young Brachyplatystoma spp. (Siluriformes: Pimelodidae) along the rapids stretch of the Madeira River (Brazil) before the construction of two hydroelectric dams

Monthly (April 2009 to May 2010) bottom-trawl sampling for Brachyplatystoma species along the rapids stretch of the Madeira River in Brazil revealed that Brachyplatystoma rousseauxii larvae and juveniles were present in low abundances in all areas and during all hydrological periods. the presence of larvae and juveniles throughout the hydrological cycle suggests asynchronous spawning in the headwaters of the Madeira River. (C) 2015 the Fisheries Society of the British IslesConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Univ Fed Rondonia, Programa Posgrad Rede Biodiversidade & Biotecnol, Dept Biol, Lab Ictiol & Pesca, BR-76801059 Porto Velho, RO, BrazilUniv Fed Rondonia, Dept Biol, Lab Ictiol & Pesca, BR-76801059 Porto Velho, RO, BrazilUniversidade Federal de São Paulo, Dept Ciencias Mar, BR-11030400 São Paulo, BrazilUniv Fed Amazonas, BR-69080971 Manaus, Amazonas, BrazilInst Nacl de Pesquisas da Amazonia, Coordenacao Biodiversidade, BR-69080971 Manaus, Amazonas, BrazilEDIA, LMI, UMR BOREA, Inst Rech Dev, F-34394 Montpellier 5, FranceUniversidade Federal de São Paulo, Dept Ciencias Mar, BR-11030400 São Paulo, BrazilCNPq: 307464/2009-1Web of Scienc

Freshwater fish diversity hotspots for conservation priorities in the Amazon Basin

Conserving freshwater habitats and their biodiversity in the Amazon Basin is a growing challenge in the face of rapid anthropogenic changes. We used the most comprehensive fish‐occurrence database available (2355 valid species; 21,248 sampling points) and 3 ecological criteria (irreplaceability, representativeness, and vulnerability) to identify biodiversity hotspots based on 6 conservation templates (3 proactive, 1 reactive, 1 representative, and 1 balanced) to provide a set of alternative planning solutions for freshwater fish protection in the Amazon Basin. We identified empirically for each template the 17% of sub‐basins that should be conserved and performed a prioritization analysis by identifying current and future (2050) threats (i.e., degree of deforestation and habitat fragmentation by dams). Two of our 3 proactive templates had around 65% of their surface covered by protected areas; high levels of irreplaceability (60% of endemics) and representativeness (71% of the Amazonian fish fauna); and low current and future vulnerability. These 2 templates, then, seemed more robust for conservation prioritization. The future of the selected sub‐basins in these 2 proactive templates is not immediately threatened by human activities, and these sub‐basins host the largest part of Amazonian biodiversity. They could easily be conserved if no additional threats occur between now and 2050

Drivers of phylogenetic structure in Amazon freshwater fish assemblages

Aim: Phylogenetic relatedness among species can provide useful information on the diversification history and past dispersal events that may have shaped contemporary assemblages. Here, using of the most comprehensive fish occurrence database currently available and a global molecular phylogeny of ray-finned fishes, we evaluate the respective roles of historical and contemporary processes in generating and maintaining fish assemblage phylodiversity patterns among 97 sub-drainages covering the Amazon River basin. Location: Amazon River basin. Taxon: Freshwater fishes. Methods: Using a large comprehensive database of freshwater fish species distributions, and a global molecular phylogeny of ray-finned (actinopterygian) fishes, we estimated historical and contemporary environmental effects on sub-drainage fish phylodiversity patterns using three phylogenetic metrics standardized for richness effect: Phylogenetic Diversity (ses.PD), Mean pairwise Phylogenetic Distance between species capturing patterns at older evolutionary timescales (ses.MPD), and Mean Nearest Taxon Distance capturing patterns at younger evolutionary timescales (ses.MNTD). Results: We found significant effects of elevation gradients, contemporary climate, and water types on assemblage phylodiversity patterns. Furthermore, we found significant relationships among the three phylogenetic metrics used, and between these metrics and the distance of sub-drainages to the Amazon River mouth, representing the Amazon basin West-East longitudinal gradient. Main conclusions: Phylogenetic diversity showed a highly non-random spatial distribution across the Amazon basin. Beyond significant regional effects of several contemporary and historical drivers, there was a significant West-East decline in subdrainage assemblages phylogenetic clustering, along with an increase in phylogenetic diversity. These latter patterns suggest deeper evolutionary divergences among taxa located to the East, and more recent radiations in the Western sub-drainages. Based on these findings and given that assemblages are, on average more species-rich in sub-basins of the Western part of the basin than in their Eastern relatives, we conclude that Western Amazon can be seen as an evolutionary “cradle” of biodiversity for freshwater fishes

The combined effects of climate change and river fragmentation on the distribution of Andean Amazon fishes

Upstream range shifts of freshwater fishes have been documented in recent years due to ongoing climate change. River fragmentation by dams, presenting physical barriers, can limit the climatically induced spatial redistribution of fishes. Andean freshwater ecosystems in the Neotropical region are expected to be highly affected by these future disturbances. However, proper evaluations are still missing. Combining species distribution models and functional traits of Andean Amazon fishes, coupled with dam locations and climatic projections (2070s), we (a) evaluated the potential impacts of future climate on species ranges, (b) investigated the combined impact of river fragmentation and climate change and (c) tested the relationships between these impacts and species functional traits. Results show that climate change will induce range contraction for most of the Andean Amazon fish species, particularly those inhabiting highlands. Dams are not predicted to greatly limit future range shifts for most species (i.e., the Barrier effect). However, some of these barriers should prevent upstream shifts for a considerable number of species, reducing future potential diversity in some basins. River fragmentation is predicted to act jointly with climate change in promoting a considerable decrease in the probability of species to persist in the long-term because of splitting species ranges in smaller fragments (i.e., the Isolation effect). Benthic and fast-flowing water adapted species with hydrodynamic bodies are significantly associated with severe range contractions from climate change

Shedding light on the migratory patterns of the Amazonian goliath catfish, Brachyplatystoma platynemum, using otolith Sr-87/Sr-86 analyses

In the Amazon, migratory catfishes of the genus Brachyplatystoma are apex predators that are important for fisheries and conservation. The life cycle of Brachyplatystoma platynemum Boulenger, 1898 is poorly known, although it has been hypothesized to be very similar to that of Brachyplatystoma rousseauxii Castelnau, 1855, which uses the entire length of the Amazon basin to complete its life cycle (from the Andes to the estuary). This study provides the first data on the migratory patterns of B.platynemum at the individual level using otolith microchemistry. In total, 94 individuals were sampled close to major breeding areas in the Amazon basin (78 fish from the middle and upper Madeira River and 14 fish from the upper Amazon), and their lifetime movements were assessed by measuring variations in Sr-87/Sr-86 along transverse sections of their otoliths (ear stones), using laser ablation multi-collector mass spectrometry (LA-MC-ICP-MS). The migrations of B.platynemum are not as extensive as those of B.rousseauxii, and do not involve natal homing. Furthermore, the estuary is not a nursery area, at least for fish hatched in the Madeira. Nevertheless, B.platynemum migrates several thousand kilometres within the Amazon basin, with transboundary displacements between at least Bolivia, Brazil, and Peru. Current and planned hydroelectric development in the Amazon basin will severely disrupt both migration and access to breeding grounds, ultimately affecting the recruitment and population dynamics of these apex predators. The conservation of B.platynemum is crucial for the stability of the Amazonian aquatic food webs. This requires building effective fish passage on the two existing Madeira dams and considering alternative options to the large-scale hydropower development in the Amazon basin

Unmasking continental natal homing in goliath catfish from the upper Amazon

Amazonian goliath catfishes are widespread in the Amazon Basin. Recently, otolith Sr-87:Sr-86 analyses using laser ablation-multi-collector-inductively coupled plasma mass spectrometry (LA-MC-ICPMS) revealed a >8,000 km trans-Amazonian natal homing in Brachyplatystoma rousseauxii among fish caught and hatched in the largest Amazon River tributary, the upper Madeira basin. Although also suspected for fish in the upper Amazon, homing could not be demonstrated owing to less distinct environmental Sr-87:Sr-86 gradients along the Amazon mainstem. Using scanning X-ray fluorescence microscopy (SXFM), a separate study provided evidence that Se:Ca and Sr:Ca are useful markers for identifying migration into Andean headwaters and the estuarine environment. We analysed otoliths of known Sr-87:Sr-86 profiles using SXFM mapping to test if Sr:Ca and Se:Ca patterns could demonstrate natal homing for three fish caught in the upper Amazon, using as reference two individuals that were natal homers and two forced residents (hatched after the construction of hydroelectric dams on the Madeira River) from the upper Madeira River. As hypothesised, although the Sr isotope profiles of the upper Amazon individuals were uninformative, two of them presented similar alternating mirror patterns of Sr:Ca and Se:Ca to those of the upper Madeira natal homers, indicating migrations out of the Andean region and into the estuary area. Both were therefore natal homers from the upper Amazon. The third individual from the upper Amazon presented similar Sr:Ca and Se:Ca patterns to those of the upper Madeira residents, suggesting it was a natural resident from the upper Amazon. By combining the results of Sr-87:Sr-86 analyses (LA-MC-ICPMS) and Sr:Ca and Se:Ca mappings (SXFM) that are completely independent of one another, we demonstrated that B. rousseauxii also performs natal homing in the upper Amazon. Our results indicate that the life cycle of B. rousseauxii is more complex than previous literature hypothesised, with the existence of partial migration, even in absence of physical barriers. Quantifying the relative importance of these different life-history strategies will have important implications for fisheries management. Our results also lay the groundwork for conservation efforts in the context of hydropower development in the Amazon Basin and set testable hypotheses of the potential impacts of the Madeira River dams