Actin filament assembly by bacterial factors VopL/F: Which end is up?

Competing models have been proposed for actin filament nucleation by the bacterial proteins VopL/F. In this issue, Burke et al. (2017. J. Cell Biol. https://doi.org/10.1083/jcb.201608104) use direct observation to demonstrate that VopL/F bind the barbed and pointed ends of actin filaments but only nucleate new filaments from the pointed end

Vortices and the entrainment transition in the 2D Kuramoto model

We study synchronization in the two-dimensional lattice of coupled phase oscillators with random intrinsic frequencies. When the coupling $K$ is larger than a threshold $K_E$, there is a macroscopic cluster of frequency-synchronized oscillators. We explain why the macroscopic cluster disappears at $K_E$. We view the system in terms of vortices, since cluster boundaries are delineated by the motion of these topological defects. In the entrained phase ($K>K_E$), vortices move in fixed paths around clusters, while in the unentrained phase ($K<K_E$), vortices sometimes wander off. These deviant vortices are responsible for the disappearance of the macroscopic cluster. The regularity of vortex motion is determined by whether clusters behave as single effective oscillators. The unentrained phase is also characterized by time-dependent cluster structure and the presence of chaos. Thus, the entrainment transition is actually an order-chaos transition. We present an analytical argument for the scaling $K_E\sim K_L$ for small lattices, where $K_L$ is the threshold for phase-locking. By also deriving the scaling $K_L\sim\log N$, we thus show that $K_E\sim\log N$ for small $N$, in agreement with numerics. In addition, we show how to use the linearized model to predict where vortices are generated.Comment: 11 pages, 8 figure

Optimal location of tsunami warning buoys and sea level monitoring stations in the mediterranean sea

The present study determines the optimal location of detection components of a tsunami warning system in the Mediterranean region given the existing and planned infrastructure. Specifically, we examine the locations of existing tsunameters DART buoys and coastal sea-level monitoring stations to see if additional buoys and stations will improve the proportion of the coastal population that may receive a warning ensuring a timely response. A spreadsheet model is used to examine this issue. Based on the historical record of tsunamis and assuming international cooperation in tsunami detection, it is demonstrated that the existing network of sea level stations and tsunameters enable around ninety percent of the coastal population of the Mediterranean Sea to receive a 15 minute warning. Improvement in this result can be achieved through investment in additional real-time, coastal, sea level monitoring stations. This work was undertaken as a final year undergraduate research project

A Low Frequency Survey of the Galactic Plane Near l=11 degrees: Discovery of Three New Supernova Remnants

We have imaged a 1 deg^2 field centered on the known Galactic supernova remnant (SNR) G11.2-0.3 at 74, 330, and 1465 MHz with the Very Large Array radio telescope (VLA) and 235 MHz with the Giant Metrewave Radio Telescope (GMRT). The 235, 330, and 1465 MHz data have a resolution of 25 arcsec, while the 74 MHz data have a resolution of 100 arcsec. The addition of this low frequency data has allowed us to confirm the previously reported low frequency turnover in the radio continuum spectra of the two known SNRs in the field: G11.2-0.3 and G11.4-0.1 with unprecedented precision. Such low frequency turnovers are believed to arise from free-free absorption in ionized thermal gas along the lines of site to the SNRs. Our data suggest that the 74 MHz optical depths of the absorbing gas is 0.56 and 1.1 for G11.2-0.3 and G11.4-0.1, respectively. In addition to adding much needed low frequency integrated flux measurements for two known SNRs, we have also detected three new SNRs: G11.15-0.71, G11.03-0.05, and G11.18+0.11. These new SNRs have integrated spectral indices between -0.44 and -0.80. Because of confusion with thermal sources, the high resolution (compared to previous Galactic radio frequency surveys) and surface brightness sensitivity of our observations have been essential to the identification of these new SNRs. With this study we have more than doubled the number of SNRs within just a 1 deg^2 field of view in the inner Galactic plane. This result suggests that future low frequency observations of the Galactic plane of similar quality may go a long way toward alleviating the long recognized incompleteness of Galactic SNR catalogs.Comment: 31 pages, 9 figures. Figure 7 is in color. Accepted to A

What can we learn about immediate memory from the development of children's free recall?

We ask the question: Which aspects of immediate memory performance improve with age? In two studies, we reexamine the widely held view that primary memory capacity estimates derived from children's immediate free recall are age invariant. This was done by assessing children's immediate free-recall accuracy while also measuring the order in which they elected to recall items (Experiment 1) and by encouraging children to begin free recall with items from towards the end of the presented list (Experiment 2). Across samples aged between 5 and 8 years we replicated the previously reported age-related changes in free-recall serial position functions when aggregated across all trials of the standard task, including an absence of age differences in the recency portion of this curve. However, we also show that this does not reflect the fact that primary memory capacity is constant across age. Instead, when we incorporate order of report information, clear age differences are evident in the recall of list-final items that are output at the start of a participant's response. In addition, the total amount that individuals recalled varied little across different types of free-recall tasks. These findings have clear implications for the use of immediate free recall as a means of providing potential indices of primary memory capacity and in the study of the development of immediate memory

Existence of a phase transition under finite magnetic field in the long-range RKKY Ising spin glass Dyx_{x}Y1−x_{1-x}Ru2_{2}Si2_{2}

A phase transition of a model compound of the long-range Ising spin glass (SG) Dy$_{x}$Y$_{1-x}$Ru$_{2}$Si$_{2}$, where spins interact via the RKKY interaction, has been investigated. The static and the dynamic scaling analyses reveal that the SG phase transition in the model magnet belongs to the mean-field universality class. Moreover, the characteristic relaxation time in finite magnetic fields exhibits a critical divergent behavior as well as in zero field, indicating a stability of the SG phase in finite fields. The presence of the SG phase transition in field in the model magnet strongly syggests that the replica symmetry is broken in the long-range Ising SG.Comment: 4 pages, 4 figures, to be published in JPSJ (2010

Beating patterns of filaments in viscoelastic fluids

Many swimming microorganisms, such as bacteria and sperm, use flexible flagella to move through viscoelastic media in their natural environments. In this paper we address the effects a viscoelastic fluid has on the motion and beating patterns of elastic filaments. We treat both a passive filament which is actuated at one end, and an active filament with bending forces arising from internal motors distributed along its length. We describe how viscoelasticity modifies the hydrodynamic forces exerted on the filaments, and how these modified forces affect the beating patterns. We show how high viscosity of purely viscous or viscoelastic solutions can lead to the experimentally observed beating patterns of sperm flagella, in which motion is concentrated at the distal end of the flagella

Unusual Dynamical Scaling in the Spatial Distribution of Persistent Sites in 1D Potts Models

The distribution, n(k,t), of the interval sizes, k, between clusters of persistent sites in the dynamical evolution of the one-dimensional q-state Potts model is studied using a combination of numerical simulations, scaling arguments, and exact analysis. It is shown to have the scaling form n(k,t) = t^{-2z} f(k/t^z), with z= max(1/2,theta), where theta(q) is the persistence exponent which characterizes the fraction of sites which have not changed their state up to time t. When theta > 1/2, the scaling length, t^theta, for the interval-size distribution is larger than the coarsening length scale, t^{1/2}, that characterizes spatial correlations of the Potts variables.Comment: RevTex, 11 page

Contributions of MyD88-Dependent Receptors and CD11c-Positive Cells to Corneal Epithelial Barrier Function Against Pseudomonas Aeruginosa

Previously we reported that corneal epithelial barrier function against Pseudomonas aeruginosa was MyD88-dependent. Here, we explored contributions of MyD88-dependent receptors using vital mouse eyes and confocal imaging. Uninjured IL-1R (−/−) or TLR4 (−/−) corneas, but not TLR2 (−/−), TLR5 (−/−), TLR7 (−/−), or TLR9 (−/−), were more susceptible to P. aeruginosa adhesion than wild-type (3.8-fold, 3.6-fold respectively). Bacteria adherent to the corneas of IL-1R (−/−) or TLR5 (−/−) mice penetrated beyond the epithelial surface only if the cornea was superficially-injured. Bone marrow chimeras showed that bone marrow-derived cells contributed to IL-1R-dependent barrier function. In vivo, but not ex vivo, stromal CD11c+ cells responded to bacterial challenge even when corneas were uninjured. These cells extended processes toward the epithelial surface, and co-localized with adherent bacteria in superficially-injured corneas. While CD11c+ cell depletion reduced IL-6, IL-1β, CXCL1, CXCL2 and CXCL10 transcriptional responses to bacteria, and increased susceptibility to bacterial adhesion (\u3e3-fold), the epithelium remained resistant to bacterial penetration. IL-1R (−/−) corneas also showed down-regulation of IL-6 and CXCL1 genes with and without bacterial challenge. These data show complex roles for TLR4, TLR5, IL-1R and CD11c+ cells in constitutive epithelial barrier function against P. aeruginosa, with details dependent upon in vivo conditions