983 research outputs found
Configuration Of Grafted Polystyrene Chains In The Melt: Temperature And Concentration Dependence
The concentration profiles of carboxy-terminated polystyrene chains in the melt grafted onto oxide-covered silicon substrates were measured using secondary-ion mass spectroscopy. The grafting density increased with temperature and an enthalpy of +7.4 kcal/mole was deduced for the grafting reaction, SiOH + R(COOH) ⇄ R(COOSi) + H2O. Relatively high grafting densities (σ∼6.6·mg/m2) were achieved with minimal chain distortion or displacement of long chains by shorter ones. Significant stretching of the grafted chains occurred for σ > 10 mg/m2. An equilibrium constant for the grafting reaction incorporating entropy is discussed.69577677
Multiple sequence alignment based on set covers
We introduce a new heuristic for the multiple alignment of a set of
sequences. The heuristic is based on a set cover of the residue alphabet of the
sequences, and also on the determination of a significant set of blocks
comprising subsequences of the sequences to be aligned. These blocks are
obtained with the aid of a new data structure, called a suffix-set tree, which
is constructed from the input sequences with the guidance of the
residue-alphabet set cover and generalizes the well-known suffix tree of the
sequence set. We provide performance results on selected BAliBASE amino-acid
sequences and compare them with those yielded by some prominent approaches
Anisotropic low field behavior and the observation of flux jumps in CeCoIn5
The magnetic behavior of the heavy fermion superconductor CeCoIn5 has been
investigated. The low field magnetization data show flux jumps in the mixed
state of the superconducting phase in a restricted range of temperature. These
flux jumps begin to disappear below 1.7 K, and are completely absent at 1.5 K.
The magnetization loops are asymmetric, suggesting that surface and geometrical
factors dominate the pinning in this system. The lower critical field (Hc1),
obtained from the magnetization data, shows a linear temperature dependence and
is anisotropic. The calculated penetration depth is also anisotropic, which is
consistent with the observation of an anisotropic superconducting gap in
CeCoIn5. The critical currents, determined from the high field isothermal
magnetization loops, are comparatively low (around 4000 A/cm2 at 1.6 K and 5
kOe).Comment: 4 pages 3 figure
Electrochemical capacitance of a leaky nano-capacitor
We report a detailed theoretical investigation on electrochemical capacitance
of a nanoscale capacitor where there is a DC coupling between the two
conductors. For this ``leaky'' quantum capacitor, we have derived general
analytic expressions of the linear and second order nonlinear electrochemical
capacitance within a first principles quantum theory in the discrete potential
approximation. Linear and nonlinear capacitance coefficients are also derived
in a self-consistent manner without the latter approximation and the
self-consistent analysis is suitable for numerical calculations. At linear
order, the full quantum formula improves the semiclassical analysis in the
tunneling regime. At nonlinear order which has not been studied before for
leaky capacitors, the nonlinear capacitance and nonlinear nonequilibrium charge
show interesting behavior. Our theory allows the investigation of crossover of
capacitance from a full quantum to classical regimes as the distance between
the two conductors is changed
Dark energy from conformal symmetry breaking
The breakdown of conformal symmetry in a conformally invariant scalar-tensor
gravitational model is revisited in the cosmological context. Although the old
scenario of conformal symmetry breaking in cosmology containing scalar field
has already been used in many earlier works, it seems that no special attention
has been paid for the investigation on the possible connection between the
breakdown of conformal symmetry and the existence of dark energy. In this
paper, it is shown that the old scenario of conformal symmetry breaking in
cosmology, if properly interpreted, not only has a potential ability to
describe the origin of dark energy as a symmetry breaking effect, but also may
resolve the coincidence problem.Comment: 11 pages, minor revision, published online in EPJ
Melting behavior of ultrathin titanium nanowires
The thermal stability and melting behavior of ultrathin titanium nanowires
with multi-shell cylindrical structures are studied using molecular dynamic
simulation. The melting temperatures of titanium nanowires show remarkable
dependence on wire sizes and structures. For the nanowire thinner than 1.2 nm,
there is no clear characteristic of first-order phase transition during the
melting, implying a coexistence of solid and liquid phases due to finite size
effect. An interesting structural transformation from helical multi-shell
cylindrical to bulk-like rectangular is observed in the melting process of a
thicker hexagonal nanowire with 1.7 nm diameter.Comment: 4 pages, 4 figure
Lepton flavor violating signals of a little Higgs model at the high energy linear colliders
Littlest Higgs model predicts the existence of the doubly charged
scalars , which generally have large flavor changing couplings
to leptons. We calculate the contributions of to the lepton
flavor violating processes and , and compare our numerical results with the current
experimental upper limits on these processes. We find that some of these
processes can give severe constraints on the coupling constant and the
mass parameter . Taking into account the constraints on these free
parameters, we further discuss the possible lepton flavor violating signals of
at the high energy linear collider
experiments. Our numerical results show that the possible signals of
might be detected via the subprocesses in the future experiments.Comment: 16 pages, 7 figures. Discussions and references added, typos
correcte
Modified f(G) gravity models with curvature-matter coupling
A modified f(G) gravity model with coupling between matter and geometry is
proposed, which is described by the product of the Lagrange density of the
matter and an arbitrary function of the Gauss-Bonnet term. The field equations
and the equations of motion corresponding to this model show the
non-conservation of the energy-momentum tensor, the presence of an extra-force
acting on test particles and the non-geodesic motion. Moreover, the energy
conditions and the stability criterion at de Sitter point in the modified f(G)
gravity models with curvature-matter coupling are derived, which can degenerate
to the well-known energy conditions in general relativity. Furthermore, in
order to get some insight on the meaning of these energy conditions, we apply
them to the specific models of f(G) gravity and the corresponding constraints
on the models are given. In addition, the conditions and the candidate for
late-time cosmic accelerated expansion in the modified f(G) gravity are studied
by means of conditions of power-law expansion and the equation of state of
matter less than -1/ 3 .Comment: 13 pages, 4 figure
Vector meson production and nucleon resonance analysis in a coupled-channel approach for energies m_N < sqrt(s) < 2 GeV I: pion-induced results and hadronic parameters
We present a nucleon resonance analysis by simultaneously considering all
pion- and photon-induced experimental data on the final states gamma N, pi N, 2
pi N, eta N, K Lambda, K Sigma, and omega N for energies from the nucleon mass
up to sqrt(s) = 2 GeV. In this analysis we find strong evidence for the
resonances P_{31}(1750), P_{13}(1900), P_{33}(1920), and D_{13}(1950). The
omega N production mechanism is dominated by large P_{11}(1710) and
P_{13}(1900) contributions. In this first part, we present the results of the
pion-induced reactions and the extracted resonance and background properties
with emphasis on the difference between global and purely hadronic fits.Comment: 54 pages, 26 figures, discussion extended, typos corrected,
references updated, to appear in Phys. Rev.
siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Background
Understanding the DNA methylome and its relationship with non-coding RNAs, including microRNAs (miRNAs) and long non-coding RNAs (lncRNAs), is essential for elucidating the molecular mechanisms underlying key biological processes in plants. Few studies have examined the functional roles of the DNA methylome in grass species with highly heterozygous polyploid genomes.
Results
We performed genome-wide DNA methylation profiling in the tetraploid switchgrass (Panicum virgatum L.) cultivar \u2018Alamo\u2019 using bisulfite sequencing. Single-base-resolution methylation patterns were observed in switchgrass leaf and root tissues, which allowed for characterization of the relationship between DNA methylation and mRNA, miRNA, and lncRNA populations. The results of this study revealed that siRNAs positively regulate DNA methylation of the mCHH sites surrounding genes, and that DNA methylation interferes with gene and lncRNA expression in switchgrass. Ninety-six genes covered by differentially methylated regions (DMRs) were annotated by GO analysis as being involved in stimulus-related processes. Functionally, 82% (79/96) of these genes were found to be hypomethylated in switchgrass root tissue. Sequencing analysis of lncRNAs identified two lncRNAs that are potential precursors of miRNAs, which are predicted to target genes that function in cellulose biosynthesis, stress regulation, and stem and root development.
Conclusions
This study characterized the DNA methylome in switchgrass and elucidated its relevance to gene and non-coding RNAs. These results provide valuable genomic resources and references that will aid further epigenetic research in this important biofuel crop
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