Seagrass Habitats as Nurseries for Reef-Associated Fish: Evidence from Fish Assemblages in and Adjacent to a Recently Established No-Take Marine Reserve in Dry Tortugas National Park, Florida, USA

Scientists and managers worldwide have increasingly advocated the use of marine protected areas (MPAs) to protect at—risk fish stocks. Most MPAs, however, have been established to protect reefs, while nonreef habitats, such as seagrasses, have received less consideration. In January 2007, an MPA called the Research Natural Area (RNA), was established as a no—take marine reserve in the Dry Tortugas National Park, Florida (DTNP), becoming the first MPA within the park boundaries to offer direct protection to seagrasses and reef habitat. We conducted a study using small—mesh Antillean Z—traps to (1) characterize fish assemblages in seagrass and reef habitats and (2) assess if differences in community structure existed between the RNA and adjacent open—use areas. Over 3 sampling events (Fall 2009, Spring 2010, Fall 2010), 3,163 individuals of 38 species were collected from 129 stations. Fish assemblages differed significantly among sampling events and between habitat types, but no differences were evident between the RNA and open—use areas. Unlike previous sampling efforts that focused on larger—bodied fish in the DTNP, Z—traps targeted small—bodied reef— and seagrass—associated fishes. Juvenile Haemulon plumierii and Epinephelus morio strongly contributed to community structure and were more abundant in seagrass habitats, which may serve as an important nursery area. Because the RNA was only established 2 years before this study was conducted, it could still be several years before benefits to the juvenile population become evident, but this study establishes the importance of consider-ing seagrass habitats when developing a reef—associated no—take marine reserve

Spatial and Size Distribution of Red Drum Caught and Released in Tampa Bay, Florida, and Factors Associated with Post-Release Hooking Mortality

The recreational fishery for red drum (Sciaenops ocellatus) in Florida is unusual in that most red drum targeted are immature and caught within estuarine waters. Current state regulations rely exclusively on bag and size limits, resulting in the release of a large proportion of captured individuals. This study employed hook-and-line sampling conducted monthly in Tampa Bay, Florida and catch-and-release mortality experiments to determine the spatial and size distribution of red drum and the mortality rate of released fish, respectively. Of the 1,405 red drum collected, more than 70% were smaller than the minimum legal size (457 mm standard length (SL)). Size structure of red drum varied spatially and reflected ontogenetic patterns of habitat use. Data collected during catch-and-release mortality experiments were analyzed to identify factors associated with mortality. A total of 251 red drum (203-618 mm SL) were caught and held for 48 h during 9 experiments, with an overall mortality rate of 5.6%. Higher water temperature and anatomical hook position were significantly correlated with mortality; lip-hooked fish had the lowest mortality rate, while throat-hooked fish had the highest. Although hook type was not correlated with mortality, it did influence whether a fish was deep-hooked. Fish caught by J-hooks were more likely to be deep-hooked than those caught by circle hooks. Catch-and-release fishing is an effective management tool for reducing take but may contribute to short-term mortality, especially in warm, subtropical estuaries

Effects of preservation methods of muscle tissue from upper-trophic level reef fishes on stable isotope values (δ13C and δ15N)

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PeerJ 3 (2015): e874, doi:10.7717/peerj.874.Research that uses stable isotope analysis often involves a delay between sample collection in the field and laboratory processing, therefore requiring preservation to prevent or reduce tissue degradation and associated isotopic compositions. Although there is a growing literature describing the effects of various preservation techniques, the results are often contextual, unpredictable and vary among taxa, suggesting the need to treat each species individually. We conducted a controlled experiment to test the effects of four preservation methods of muscle tissue from four species of upper trophic-level reef fish collected from the eastern Gulf of Mexico (Red Grouper Epinephelus morio, Gag Mycteroperca microlepis, Scamp Mycteroperca phenax, and Red Snapper Lutjanus campechanus). We used a paired design to measure the effects on isotopic values for carbon and nitrogen after storage using ice, 95% ethanol, and sodium chloride (table salt), against that in a liquid nitrogen control. Mean offsets for both δ13C and δ15N values from controls were lowest for samples preserved on ice, intermediate for those preserved with salt, and highest with ethanol. Within species, both salt and ethanol significantly enriched the δ15N values in nearly all comparisons. Ethanol also had strong effects on the δ13C values in all three groupers. Conversely, for samples preserved on ice, we did not detect a significant offset in either isotopic ratio for any of the focal species. Previous studies have addressed preservation-induced offsets in isotope values using a mass balance correction that accounts for changes in the isotope value to that in the C/N ratio. We tested the application of standard mass balance corrections for isotope values that were significantly affected by the preservation methods and found generally poor agreement between corrected and control values. The poor performance by the correction may have been due to preferential loss of lighter isotopes and corresponding low levels of mass loss with a substantial change in the isotope value of the sample. Regardless of mechanism, it was evident that accounting for offsets caused by different preservation methods was not possible using the standard correction. Caution is warranted when interpreting the results from specimens stored in either ethanol or salt, especially when using those from multiple preservation techniques. We suggest the use of ice as the preferred preservation technique for muscle tissue when conducting stable isotope analysis as it is widely available, inexpensive, easy to transport and did not impart a significant offset in measured isotopic values. Our results provide additional evidence that preservation effects on stable isotope analysis can be highly contextual, thus requiring their effects to be measured and understood for each species and isotopic ratio of interest before addressing research questions.Funding was provided by a grant to CD Stallings and TS Switzer from the National Oceanic and Atmospheric Administration, Cooperative Research Program (NA12NMF4540081)

The Role of Citizens in Detecting and Responding to a Rapid Marine Invasion

Documenting and responding to species invasions requires innovative strategies that account for ecological and societal complexities. We used the recent expansion of Indo-Pacific lionfish (Pterois volitans/miles) throughout northern Gulf of Mexico coastal waters to evaluate the role of stakeholders in documenting and responding to a rapid marine invasion. We coupled an online survey of spearfishers and citizen science monitoring programs with traditional fishery-independent data sources and found that citizen observations documented lionfish 1–2 years earlier and more frequently than traditional reef fish monitoring programs. Citizen observations first documented lionfish in 2010 followed by rapid expansion and proliferation in 2011 (+367%). From the survey of spearfishers, we determined that diving experience and personal observations of lionfish strongly influenced perceived impacts, and these perceptions were powerful predictors of support for initiatives. Our study demonstrates the value of engaging citizens for assessing and responding to large-scale and time-sensitive conservation problems

Ontogenetic and Long-Term Diet Shifts of a Generalist Juvenile Predatory Fish in an Urban Estuary Undergoing Dramatic Changes in Habitat Availability

Vegetated areas such as seagrass beds provide food and essential habitat for many fish and invertebrate species. In particular, many economically important fishes depend on seagrass beds as nursery grounds. In recent decades, there has been a rapid decline in seagrass coverage due to the development of coastal areas worldwide, altering these ecosystems and their community structure. Within Tampa Bay (Florida\u27s largest estuary), seagrass coverage and water quality underwent a decline followed by a recovery over the past three decades; these changes may have altered the community structure of seagrass-associated fauna. We examined the diets of juvenile Spotted Seatrout Cynoscion nebulosus, a common estuarine predator, to assess whether documented changes in water quality and habitat were reflected in their trophodynamics. Stomach contents of Spotted Seatrout from Tampa Bay were sampled during three different studies conducted in 1981–1982, 1991–1992, and 2005–2013. We analyzed data from these studies to compare the diet across size-classes and time periods. Using canonical analysis of principal coordinates, we discerned significant differences in diet composition among size-classes and among time periods. Ontogenetic shifts in diet during all three time periods were consistent with those previously reported, highlighting the plasticity of a generalist piscivore in a recovering seagrass ecosystem. Subtle shifts in diet were detected among the three time periods, suggesting that changes in seagrass coverage contributed to altered trophodynamics in this estuarine system. Our efforts highlight the utility of using a generalist piscivore\u27s diet as a tool for monitoring and quantifying faunal shifts in an ecosystem

Effects of Preservation Methods of Muscle Tissue from Upper-trophic Level Reef Fishes on Stable Isotope Values (δ\u3csup\u3e13\u3c/sup\u3eC and δ\u3csup\u3e15\u3c/sup\u3eN)

Research that uses stable isotope analysis often involves a delay between sample collection in the field and laboratory processing, therefore requiring preservation to prevent or reduce tissue degradation and associated isotopic compositions. Although there is a growing literature describing the effects of various preservation techniques, the results are often contextual, unpredictable and vary among taxa, suggesting the need to treat each species individually. We conducted a controlled experiment to test the effects of four preservation methods of muscle tissue from four species of upper trophic-level reef fish collected from the eastern Gulf of Mexico (Red Grouper Epinephelus morio, Gag Mycteroperca microlepis, Scamp Mycteroperca phenax, and Red Snapper Lutjanus campechanus). We used a paired design to measure the effects on isotopic values for carbon and nitrogen after storage using ice, 95% ethanol, and sodium chloride (table salt), against that in a liquid nitrogen control. Mean offsets for both δ13C and δ15N values from controls were lowest for samples preserved on ice, intermediate for those preserved with salt, and highest with ethanol. Within species, both salt and ethanol significantly enriched the δ15N values in nearly all comparisons. Ethanol also had strong effects on the δ13C values in all three groupers. Conversely, for samples preserved on ice, we did not detect a significant offset in either isotopic ratio for any of the focal species. Previous studies have addressed preservation-induced offsets in isotope values using a mass balance correction that accounts for changes in the isotope value to that in the C/N ratio. We tested the application of standard mass balance corrections for isotope values that were significantly affected by the preservation methods and found generally poor agreement between corrected and control values. The poor performance by the correction may have been due to preferential loss of lighter isotopes and corresponding low levels of mass loss with a substantial change in the isotope value of the sample. Regardless of mechanism, it was evident that accounting for offsets caused by different preservation methods was not possible using the standard correction. Caution is warranted when interpreting the results from specimens stored in either ethanol or salt, especially when using those from multiple preservation techniques. We suggest the use of ice as the preferred preservation technique for muscle tissue when conducting stable isotope analysis as it is widely available, inexpensive, easy to transport and did not impart a significant offset in measured isotopic values. Our results provide additional evidence that preservation effects on stable isotope analysis can be highly contextual, thus requiring their effects to be measured and understood for each species and isotopic ratio of interest before addressing research questions

Effects of Preservation Methods of Muscle Tissue from Upper-trophic Level Reef Fishes on Stable Isotope Values (δ\u3csup\u3e13\u3c/sup\u3eC and δ\u3csup\u3e15\u3c/sup\u3eN)

Research that uses stable isotope analysis often involves a delay between sample collection in the field and laboratory processing, therefore requiring preservation to prevent or reduce tissue degradation and associated isotopic compositions. Although there is a growing literature describing the effects of various preservation techniques, the results are often contextual, unpredictable and vary among taxa, suggesting the need to treat each species individually. We conducted a controlled experiment to test the effects of four preservation methods of muscle tissue from four species of upper trophic-level reef fish collected from the eastern Gulf of Mexico (Red Grouper Epinephelus morio, Gag Mycteroperca microlepis, Scamp Mycteroperca phenax, and Red Snapper Lutjanus campechanus). We used a paired design to measure the effects on isotopic values for carbon and nitrogen after storage using ice, 95% ethanol, and sodium chloride (table salt), against that in a liquid nitrogen control. Mean offsets for both δ13C and δ15N values from controls were lowest for samples preserved on ice, intermediate for those preserved with salt, and highest with ethanol. Within species, both salt and ethanol significantly enriched the δ15N values in nearly all comparisons. Ethanol also had strong effects on the δ13C values in all three groupers. Conversely, for samples preserved on ice, we did not detect a significant offset in either isotopic ratio for any of the focal species. Previous studies have addressed preservation-induced offsets in isotope values using a mass balance correction that accounts for changes in the isotope value to that in the C/N ratio. We tested the application of standard mass balance corrections for isotope values that were significantly affected by the preservation methods and found generally poor agreement between corrected and control values. The poor performance by the correction may have been due to preferential loss of lighter isotopes and corresponding low levels of mass loss with a substantial change in the isotope value of the sample. Regardless of mechanism, it was evident that accounting for offsets caused by different preservation methods was not possible using the standard correction. Caution is warranted when interpreting the results from specimens stored in either ethanol or salt, especially when using those from multiple preservation techniques. We suggest the use of ice as the preferred preservation technique for muscle tissue when conducting stable isotope analysis as it is widely available, inexpensive, easy to transport and did not impart a significant offset in measured isotopic values. Our results provide additional evidence that preservation effects on stable isotope analysis can be highly contextual, thus requiring their effects to be measured and understood for each species and isotopic ratio of interest before addressing research questions

Source–sink recruitment of red snapper: Connectivity between the Gulf of Mexico and Atlantic Ocean

Geopolitical fishery management boundaries are often misaligned with the ecological population structure of marine species, which presents challenges for assessment and management of these species. Red snapper, Lutjanus campechanus, is an iconic and heavily exploited species in both the US Gulf of Mexico and off the southeastern US Atlantic coast and is managed separately in the two jurisdictions. It is hypothesized that the Atlantic red snapper stock is sustained partially by larval subsidies from the Gulf of Mexico. Here we use a biophysical modeling approach to simulate recruitment of red snapper across the entire Southeastern US region, and quantify rates of larval exchange across management jurisdictions. The biophysical framework simulates realistic red snapper behaviors and traits with respect to spatial distribution and timing of spawning, larval vertical migration and pelagic larval duration, and settlement habitat. Our results suggest that areas of the West Florida Shelf south of Tampa Bay are important sources of larvae for the Atlantic population, supplying as much as one third of the recruitment during some years. Yet, contributions of Gulf‐spawned red snapper to the Atlantic stock are highly dynamic given large variability in spatial and temporal patterns of red snapper recovery in each region. As such, effective management of the Gulf of Mexico red snapper stock, particularly the spawning population in southwest Florida, may have important consequences for the sustainable harvest of red snapper off the Atlantic coast

Integrating Towed Underwater Video and Multibeam Acoustics for Marine Benthic Habitat Mapping and Fish Population Estimation

The west Florida shelf (WFS; Gulf of Mexico, USA) is an important area for commercial and recreational fishing, yet much of it remains unmapped and unexplored, hindering effective monitoring of fish stocks. The goals of this study were to map the habitat at an intensively fished area on the WFS known as “The Elbow”, assess the differences in fish communities among different habitat types, and estimate the abundance of each fish taxa within the study area. High-resolution multibeam bathymetric and backscatter data were combined with high-definition (HD) video data collected from a near-bottom towed vehicle to characterize benthic habitat as well as identify and enumerate fishes. Two semi-automated statistical classifiers were implemented for obtaining substrate maps. The supervised classification (random forest) performed significantly better (p = 0.001; α = 0.05) than the unsupervised classification (k-means clustering). Additionally, we found it was important to include predictors at a range of spatial scales. Significant differences were found in the fish community composition among the different habitat types, with both substrate and vertical relief found to be important with rock substrate and higher relief areas generally associated with greater fish density. Our results are consistent with the idea that offshore hard-bottom habitats, particularly those of higher vertical relief, serve as “essential fish habitat”, as these rocky habitats account for just 4% of the study area but 65% of the estimated total fish abundance. However, sand contributes 35% to total fish abundance despite comparably low densities due to its large area, indicating the importance of including these habitats in estimates of abundance as well. This work demonstrates the utility of combining towed underwater video sampling and multibeam echosounder maps for habitat mapping and estimation of fish abundance