10,667 research outputs found

    A Distinct Mechanism to Achieve Efficient Signal Recognition Particle (SRP)-SRP Receptor Interaction by the Chloroplast SRP Pathway

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    Cotranslational protein targeting by the signal recognition particle (SRP) requires the SRP RNA, which accelerates the interaction between the SRP and SRP receptor 200-fold. This otherwise universally conserved SRP RNA is missing in the chloroplast SRP (cpSRP) pathway. Instead, the cpSRP and cpSRP receptor (cpFtsY) by themselves can interact 200-fold faster than their bacterial homologues. Here, cross-complementation analyses revealed the molecular origin underlying their efficient interaction. We found that cpFtsY is 5- to 10-fold more efficient than Escherichia coli FtsY at interacting with the GTPase domain of SRP from both chloroplast and bacteria, suggesting that cpFtsY is preorganized into a conformation more conducive to complex formation. Furthermore, the cargo-binding M-domain of cpSRP provides an additional 100-fold acceleration for the interaction between the chloroplast GTPases, functionally mimicking the effect of the SRP RNA in the cotranslational targeting pathway. The stimulatory effect of the SRP RNA or the M-domain of cpSRP is specific to the homologous SRP receptor in each pathway. These results strongly suggest that the M-domain of SRP actively communicates with the SRP and SR GTPases and that the cytosolic and chloroplast SRP pathways have evolved distinct molecular mechanisms (RNA vs. protein) to mediate this communication

    Robust filtering for gene expression time series data with variance constraints

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    This is the post print version of the article. The official published version can be obtained from the link below - Copyright 2007 Taylor & Francis Ltd.In this paper, an uncertain discrete-time stochastic system is employed to represent a model for gene regulatory networks from time series data. A robust variance-constrained filtering problem is investigated for a gene expression model with stochastic disturbances and norm-bounded parameter uncertainties, where the stochastic perturbation is in the form of a scalar Gaussian white noise with constant variance and the parameter uncertainties enter both the system matrix and the output matrix. The purpose of the addressed robust filtering problem is to design a linear filter such that, for the admissible bounded uncertainties, the filtering error system is Schur stable and the individual error variance is less than a prespecified upper bound. By using the linear matrix inequality (LMI) technique, sufficient conditions are first derived for ensuring the desired filtering performance for the gene expression model. Then the filter gain is characterized in terms of the solution to a set of LMIs, which can easily be solved by using available software packages. A simulation example is exploited for a gene expression model in order to demonstrate the effectiveness of the proposed design procedures.This work was supported in part by the Engineering and Physical Sciences Research Council (EPSRC) of the UK under Grants GR/S27658/01 and EP/C524586/1, the Biotechnology and Biological Sciences Research Council (BBSRC) of the UK under Grants BB/C506264/1 and 100/EGM17735, the Nuffield Foundation of the UK under Grant NAL/00630/G, and the Alexander von Humboldt Foundation of Germany

    Two-component model for the chemical evolution of the Galactic disk

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    In the present paper, we introduce a two-component model of the Galactic disk to investigate its chemical evolution. The formation of the thick and thin disks occur in two main accretion episodes with both infall rates to be Gaussian. Both the pre-thin and post-thin scenarios for the formation of the Galactic disk are considered. The best-fitting is obtained through χ2\chi^2-test between the models and the new observed metallicity distribution function of G dwarfs in the solar neighbourhood (Hou et al 1998). Our results show that post-thin disk scenario for the formation of the Galactic disk should be preferred. Still, other comparison between model predictions and observations are given.Comment: 23 pages, 7 figure

    Filtering for networked stochastic time-delay systems with sector nonlinearity

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    Copyright [2009] IEEE. This material is posted here with permission of the IEEE. Such permission of the IEEE does not in any way imply IEEE endorsement of any of Brunel University's products or services. Internal or personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution must be obtained from the IEEE by writing to [email protected]. By choosing to view this document, you agree to all provisions of the copyright laws protecting it.This paper is concerned with the filtering problem for a class of discrete-time stochastic nonlinear networked control systems with network-induced incomplete measurements. The incomplete measurements include both the multiple random communication delays and random packet losses, which are modeled by a unified stochastic expression in terms of a set of indicator functions that is dependent on certain stochastic variable. The nonlinear functions are assumed to satisfy the sector nonlinearities. The purpose of the addressed filtering problem is to design a linear filter such that the filtering-error dynamics is exponentially mean-square stable. By using the linear-matrix-inequality (LMI) method and delay-dependent technique, sufficient conditions are derived which are dependent on the occurrence probability of both the random communication delays and missing measurement. The filter gain is then characterized by the solution to a set of LMIs. A simulation example is exploited to demonstrate the effectiveness of the proposed design procedures

    Concerted Complex Assembly and GTPase Activation in the Chloroplast Signal Recognition Particle

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    The universally conserved signal recognition particle (SRP) and SRP receptor (SR) mediate the cotranslational targeting of proteins to cellular membranes. In contrast, a unique chloroplast SRP in green plants is primarily dedicated to the post-translational targeting of light harvesting chlorophyll a/b binding (LHC) proteins. In both pathways, dimerization and activation between the SRP and SR GTPases mediate the delivery of cargo; whether and how the GTPase cycle in each system adapts to its distinct substrate proteins were unclear. Here, we show that interactions at the active site essential for GTPase activation in the chloroplast SRP and SR play key roles in the assembly of the GTPase complex. In contrast to their cytosolic homologues, GTPase activation in the chloroplast SRP–SR complex contributes marginally to the targeting of LHC proteins. These results demonstrate that complex assembly and GTPase activation are highly coupled in the chloroplast SRP and SR and suggest that the chloroplast GTPases may forego the GTPase activation step as a key regulatory point. These features may reflect adaptations of the chloroplast SRP to the delivery of their unique substrate protein

    Magnetism of Cold Fermionic Atoms on p-Band of an Optical Lattice

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    We carry out \textit{ab initio} study of ground state phase diagram of spin-1/2 cold fermionic atoms within two-fold degenerate pp-band of an anisotropic optical lattice. Using the Gutzwiller variational approach, we show that a robust ferromagnetic phase exists for a vast range of band fillings and interacting strengths. The ground state crosses over from spin density wave state to spin-1 Neel state at half filling. Additional harmonic trap will induce spatial separation of varies phases. We also discuss several relevant observable consequences and detection methods. Experimental test of the results reported here may shed some light on the long-standing issue of itinerant ferromagnetism.Comment: 5 pages, 4 figure
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