eDNA Sebagai Metode untuk Pemantauan Biodiversitas di Kawasan Konservasi Laut Indonesia secara efektif dan efisien

Pemerintah Indonesia perlu mendorong penggunaan teknologi environmental DNA (eDNA) sebagai metode utama dalam pemantauan biodiversitas di Kawasan Konservasi Laut (KKL) guna mengatasi tantangan logistik di wilayah yang luas dan beragam. Diperlukan investasi dalam pengembangan database eDNA nasional yang mencakup sekuens referensi spesies laut Indonesia dan pelatihan serta sertifikasi bagi para pemantau eDNA untuk memastikan kualitas data yang konsisten. Monitoring dengan eDNA dapat dilakukan secara rutin dan berkelanjutan di seluruh KKL untuk mengumpulkan data yang akurat dan mendukung pengamatan tren jangka panjang dalam keanekaragaman hayati laut. Selain itu, dukungan untuk penelitian lanjutan dalam identifikasi spesies baru dan pemahaman yang lebih dalam tentang ekologi laut Indonesia melalui teknologi eDNA juga perlu diberikan. Dengan mengimplementasikan rekomendasi ini, Indonesia dapat memperkuat upaya pelestarian keanekaragaman hayati lautnya secara efektif dan efisien, menjaga keberlanjutan ekosistem laut yang kaya dan unik di negara ini

Microstructural and Genetic Insights Into the Formation of the “Winter Diffusion Layer” in Japanese Pearl Oyster Pinctada fucata and Its Relation to Environmental Temperature Changes

金沢大学国際基幹教育院 GS教育系Phenotypic plasticity in molluscan shell microstructures may be related to environmental changes. The “winter diffusion layer,” a shell microstructure of the Japanese pearl oyster Pinctada fucata, is an example of this phenomenon. In this study, we used P. fucata specimens with shared genetic background to evaluate the seasonal plasticity of shell microstructures, at molecular level. To detect the seasonal changes in shell microstructure and mineral composition, shells of multiple individuals were periodically collected and analyzed using scanning electron microscopy and Raman spectrophotometry. Our observations of the winter diffusion layer revealed that this irregular shell layer, located between the outer and middle shell layers, had a sphenoid shape in radial section. This distinct shape might be caused by the internal extension of the outer shell layer resulting from growth halts. The winter diffusion layer could be distinguished from the calcitic outer shell layer by its aragonitic components and microstructures. Moreover, the components of the winter diffusion layer were irregular simple prismatic (the outer and inner sublayers) and homogeneous structures (the middle sublayer). This irregular formation occurred until April, when the animals resumed their “normal” shell formation after hibernation. To check for a correlation between gene expression and the changes in microstructures, we conducted qPCR of seven major biomineralization-related shell matrix protein-coding genes (aspein, prismalin-14, msi7, msi60, nacrein, n16, and n19) in the shell-forming mantle tissue. Tissue samples were collected from the mantle edge (tissue secreting the outer shell layer) and mantle pallium (where the middle shell layer is constructed) of the same individuals used for microstructural observation and mineral identification that were collected in January (winter growth break period), April (irregular shell formation period), and August (normal shell formation period). Statistically significant differences in gene expression levels were observed between mantle edge and mantle pallium, but no seasonal differences were detected in the seasonal expression patterns of these genes. These results suggest that the formation of the irregular shell layer in P. fucata is caused by a currently unknown genetic mechanism unrelated to the genes targeted in the present study. Further studies using big data (transcriptomics and manipulation of gene expression) are required to answer the questions herein raised. Nevertheless, the results herein presented are essential to unravel the intriguing mystery of the formation of the winter diffusion layer, which may allow us to understand how marine mollusks adapt or acclimate to climate changes. Copyright © 2022 Sato, Setiamarga, Yonemitsu and Higuchi

Left-right asymmetric expression of dpp in the mantle of gastropods correlates with asymmetric shell coiling

Background: Various shapes of gastropod shells have evolved ever since the Cambrian. Although theoretical analyses of morphogenesis exist, the molecular basis of shell development remains unclear. We compared expression patterns of the decapentaplegic (dpp) gene in the shell gland and mantle tissues at various developmental stages between coiled-shell and non-coiled-shell gastropods. Results: We analyzed the expression patterns of dpp for the two limpets Patella vulgata and Nipponacmea fuscoviridis, and for the dextral wild-type and sinistral mutant lineage of the pond snail Lymnaea stagnalis. The limpets had symmetric expression patterns of dpp throughout ontogeny, whereas in the pond snail, the results indicated asymmetric and mirror image patterns between the dextral and sinistral lineages. Conclusion: We hypothesize that Dpp induces mantle expansion, and the presence of a left/right asymmetric gradient of the Dpp protein causes the formation of a coiled shell. Our results provide a molecular explanation for shell, coiling including new insights into expression patterns in post-embryonic development, which should aid in understanding how various shell shapes are formed and have evolved in the gastropods.ArticleEVODEVO. 4:15 (2013)journal articl

Utilization of high-volume fly ash in pervious concrete mixtures for mangrove conservation

In environmental conservation, mangrove forests play a crucial role. Retransplanting mangrove propagules, however, faces challenges, and success rates are notably low. Achieving an optimal protector for propagules, balancing strength without impeding growth, is challenging. Mangrove propagules require a temporary protector with an optimal balance, neither too weak nor too strong, to shield them from current waves which is difficult. We propose using pervious concrete pots with high-volume fly ash activated with low NaOH concentrations. The investigation focuses on the influence of the mixing procedure on workability, compressive strength, and mineral composition. The novel discovery in this study is the specific sequence of stirring the ingredients using an alkali activator, which adds an interesting dimension to the research. It is recommended to adopt Sequence 2 in pervious concrete production, where NaOH dissolved FA in the mixture forming albite as N-A-S-H gel product. It surely enhanced both workability and the strength confirming uniform application processes. The two recommended variants, PFS-60 and PFBS-50, effectively utilize coal ash, meeting the target compressive strength range of 3–5 MPa and providing support for mangrove pots over a 3–4 year period. Notably, both compositions maintained consistent mechanical properties during exposure to tidal conditions for 240 days.They exhibit high permeability (694 liter/m²/minute), facilitating efficient water passage without sediment entrainment

Mesozoic origin and ‘out-of-India’ radiation of ricefishes (Adrianichthyidae)

The Indian subcontinent has an origin geologically different from Eurasia, but many terrestrial animal and plant species on it have congeneric or sister species in other parts of Asia, especially in the Southeast. This faunal and floral similarity between India and Southeast Asia is explained by either of the two biogeographic scenarios, ‘into-India’ or ‘out-of-India’. Phylogenies based on complete mitochondrial genomes and five nuclear genes were undertaken for ricefishes (Adrianichthyidae) to examine which of these two biogeographic scenarios fits better. We found that Oryzias setnai, the only adrianichthyid distributed in and endemic to the Western Ghats, a mountain range running parallel to the western coast of the Indian subcontinent, is sister to all other adrianichthyids from eastern India and Southeast–East Asia. Divergence time estimates and ancestral area reconstructions reveal that this western Indian species diverged in the late Mesozoic during the northward drift of the Indian subcontinent. These findings indicate that adrianichthyids dispersed eastward ‘out-of-India’ after the collision of the Indian subcontinent with Eurasia, and subsequently diversified in Southeast–East Asia. A review of geographic distributions of ‘out-of-India’ taxa reveals that they may have largely fuelled or modified the biodiversity of Eurasia.journal articl

Effects of microbial agents to the properties of fly ash-based paste

Specific microbial agents such as bacteria are often used in concrete to improve its performance. Some microbes act as self-healing agents to close cracks in concrete, and to increase concrete strength. This paper presents a study to observe the effects of microbe addition to two types of concrete mixtures the fly ash-based, as geopolymer paste, and portland cement paste containing fly ash. Furthermore, the investigation was conducted to compare the properties of each paste, such as its compressive strengths, specific gravities, porosity, microstructures, and XRay diffracting properties. The results indicate that microbial activities positively affected the properties of both, portland cement paste and geopolymer paste. The result reported here strongly suggests that fly ash can be used to produce a high quality, but environmental friendly construction material when it’s mixed together with useful microbes

Effects of microbial agents to the properties of fly ash-based paste

Specific microbial agents such as bacteria are often used in concrete to improve its performance. Some microbes act as self-healing agents to close cracks in concrete, and to increase concrete strength. This paper presents a study to observe the effects of microbe addition to two types of concrete mixtures the fly ash-based, as geopolymer paste, and portland cement paste containing fly ash. Furthermore, the investigation was conducted to compare the properties of each paste, such as its compressive strengths, specific gravities, porosity, microstructures, and XRay diffracting properties. The results indicate that microbial activities positively affected the properties of both, portland cement paste and geopolymer paste. The result reported here strongly suggests that fly ash can be used to produce a high quality, but environmental friendly construction material when it’s mixed together with useful microbes

The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes

The greater argonaut Argonauta argo is a species of the paper nautilus (Argonautidae), which is a family in Octopoda. In this paper, we report its full mitogenome sequence, which was obtained from a specimen collected in the Japan Seas near Oki Island, Shimane Prefecture, in Japan. The sequence was determined using the NGS Illumina HiSeq platform. With its 37 genes, the mitogenome shows a typical metazoan and Octopoda genomic structure, and similar to the mitogenome of the previously reported congener, A. hians. To confirm A. argo phylogenetic position in Octopoda, we conducted maximum likelihood phylogenetic analysis, using a data set including publicly available 17 Octopodiformes, five Decapodiformes, three Nautiloids and two outgroup Conchiferans. The result confirmed the affinity of Argonautidae to Tremoctopus, and the sister group position of this clade against the rest of incirrate Octopods. The mitogenome and phylogeny of A. argo reported here will be useful for future studies involving this enigmatic species, including on the reacquisition of external calcified shell structures in mollusks

Partial redescriptions of three holothurians with "hook papillae" (Apodida Chiridotidae): Taeniogyrus japonicus (Marenzeller, 1882), T. dendyi (Mortensen 1925), Scoliorhapis theelii (Heding, 1928)

Yamana, Yusuke, Yamamoto, Masaki, Ota, Yuzo, Kohtsuka, Hisanori, Omori, Akihito, Iwasaki, Kazuma, Setiamarga, Davin H. E. (2022): Partial redescriptions of three holothurians with "hook papillae" (Apodida Chiridotidae): Taeniogyrus japonicus (Marenzeller, 1882), T. dendyi (Mortensen 1925), Scoliorhapis theelii (Heding, 1928). Zootaxa 5138 (4): 351-387, DOI: https://doi.org/10.11646/zootaxa.5138.4.