Tumour angiogenesis: The gap between theory and experiment

A common experimental technique for viewing in vivo angiogenesis utilises tumours implanted into a test animal cornea. The cornea is avascular but the tumour promotes vascularisation from the limbus and the new blood vessels can be readily observed through the transparent cornea. Many of the early mathematical models for tumour angiogenesis used this scenario as their experimental template and as such assumed that there is a large gap, of the order of 2 mm, between the tumour and neighbouring vasculature at the onset of angiogenesis. In this work we consider whether the assumption that there is a significant gap between the tumour and neighbouring vasculature is unique to intra-cornea tumour implants, or whether this characterises avascular tumour growth more generally. To do this we utilise a simple scaling argument, derive a multi-compartment model for tumour growth, and consider in vivo images. This analysis demonstrates that the corneal implant experiments and the corresponding mathematical models cannot generally be applied to a clinical setting

The dissociation constants of the carboxyl and hydroxyl groups in some insoluble and sol-forming polysaccharides

RESP-257

Analysis of the Dynamics of Liquid Aluminium: Recurrent Relation Approach

By use of the recurrent relation approach (RRA) we study the microscopic dynamics of liquid aluminium at T=973 K and develop a theoretical model which satisfies all the corresponding sum rules. The investigation covers the inelastic features as well as the crossover of our theory into the hydrodynamical and the free-particle regimes. A comparison between our theoretical results with those following from a generalized hydrodynamical approach is also presented. In addition to this we report the results of our molecular dynamics simulations for liquid aluminium, which are also discussed and compared to experimental data. The received results reveal that (i) the microscopical dynamics of density fluctuations is defined mainly by the first four even frequency moments of the dynamic structure factor, and (ii) the inherent relation of the high-frequency collective excitations observed in experimental spectra of dynamic structure factor $S(k,\omega)$ with the two-, three- and four-particle correlations.Comment: 11 pages, 4 figure

The statistics of particle velocities in dense granular flows

We present measurements of the particle velocity distribution in the flow of granular material through vertical channels. Our study is confined to dense, slow flows where the material shears like a fluid only in thin layers adjacent to the walls, while a large core moves without continuous deformation, like a solid. We find the velocity distribution to be non-Gaussian, anisotropic, and to follow a power law at large velocities. Remarkably, the distribution is identical in the fluid-like and solid-like regions. The velocity variance is maximum at the core, defying predictions of hydrodynamic theories. We show evidence of spatially correlated motion, and propose a mechanism for the generation of fluctuational motion in the absence of shear.Comment: Submitted to Phys. Rev. Let

Effective boundary conditions for dense granular flows

We derive an effective boundary condition for granular flow taking into account the effect of the heterogeneity of the force network on sliding friction dynamics. This yields an intermediate boundary condition which lies in the limit between no-slip and Coulomb friction; two simple functions relating wall stress, velocity, and velocity variance are found from numerical simulations. Moreover, we show that this effective boundary condition corresponds to Navier slip condition when GDR MiDi's model is assumed to be valid, and that the slip length depends on the length scale that characterises the system, \emph{viz} the particle diameter.Comment: 4 pages, 5 figure

Coleridge, Sara

An encylopaedia article on the life and writings of Sara Coleridge (1802-1852), for an online work of reference and scholarshi

A homological interpretation of the transverse quiver Grassmannians

In recent articles, the investigation of atomic bases in cluster algebras associated to affine quivers led the second-named author to introduce a variety called transverse quiver Grassmannian and the first-named and third-named authors to consider the smooth loci of quiver Grassmannians. In this paper, we prove that, for any affine quiver Q, the transverse quiver Grassmannian of an indecomposable representation M is the set of points N in the quiver Grassmannian of M such that Ext^1(N,M/N)=0. As a corollary we prove that the transverse quiver Grassmannian coincides with the smooth locus of the irreducible components of minimal dimension in the quiver Grassmannian.Comment: final version, 7 pages, corollary 1.2 has been modifie

Three-Dimensional Seismic Imaging of Ancient Submarine Lava Flows : An Example From the Southern Australian Margin

This work comprises a part of the Great Australian Bight Deepwater Marine Program (GABDMP) for funding this project. The GABDMP is a CSIRO research program, sponsored by Chevron Australia the results of which will be made publicly available. 3D seismic data was gratefully provided by TGS. IHS are thanked for access to seismic interpretation software. Spectral decomposition was carried out using Foster-Findlay Associates Geoteric Software. Sverre Planke and Tracy Gregg are thanked for constructive reviews.Peer reviewedPublisher PD

Cluster algebras of type A2(1)A_2^{(1)}

In this paper we study cluster algebras \myAA of type $A_2^{(1)}$. We solve the recurrence relations among the cluster variables (which form a T--system of type $A_2^{(1)}$). We solve the recurrence relations among the coefficients of \myAA (which form a Y--system of type $A_2^{(1)}$). In \myAA there is a natural notion of positivity. We find linear bases \BB of \myAA such that positive linear combinations of elements of \BB coincide with the cone of positive elements. We call these bases \emph{atomic bases} of \myAA. These are the analogue of the "canonical bases" found by Sherman and Zelevinsky in type $A_{1}^{(1)}$. Every atomic basis consists of cluster monomials together with extra elements. We provide explicit expressions for the elements of such bases in every cluster. We prove that the elements of \BB are parameterized by \ZZ^3 via their $\mathbf{g}$--vectors in every cluster. We prove that the denominator vector map in every acyclic seed of \myAA restricts to a bijection between \BB and \ZZ^3. In particular this gives an explicit algorithm to determine the "virtual" canonical decomposition of every element of the root lattice of type $A_2^{(1)}$. We find explicit recurrence relations to express every element of \myAA as linear combinations of elements of \BB.Comment: Latex, 40 pages; Published online in Algebras and Representation Theory, springer, 201

Quantum free energy differences from non-equilibrium path integrals: I. Methods and numerical application

The imaginary-time path integral representation of the canonical partition function of a quantum system and non-equilibrium work fluctuation relations are combined to yield methods for computing free energy differences in quantum systems using non-equilibrium processes. The path integral representation is isomorphic to the configurational partition function of a classical field theory, to which a natural but fictitious Hamiltonian dynamics is associated. It is shown that if this system is prepared in an equilibrium state, after which a control parameter in the fictitious Hamiltonian is changed in a finite time, then formally the Jarzynski non-equilibrium work relation and the Crooks fluctuation relation are shown to hold, where work is defined as the change in the energy as given by the fictitious Hamiltonian. Since the energy diverges for the classical field theory in canonical equilibrium, two regularization methods are introduced which limit the number of degrees of freedom to be finite. The numerical applicability of the methods is demonstrated for a quartic double-well potential with varying asymmetry. A general parameter-free smoothing procedure for the work distribution functions is useful in this context.Comment: 20 pages, 4 figures. Added clarifying remarks and fixed typo