Sviluppo di flussi ETL per il calcolo delle componenti di rischio: Basilea 2 e calcolo dell'impairment

Quanto segue è il frutto del lavoro svolto in Reply Target nel corso della mia esperienza di stage. A seguito di un periodo formativo costituito da corsi e lezioni in aula, ho avuto il privilegio di essere collocato da subito in un contesto di progettazione, e di conseguenza la possibilità di misurarmi con problematiche del mondo reale. Obiettivo del progetto ed argomento del mio lavoro è stata la realizzazione di flussi ETL (Extract, transform and load) per uno studio di Business Intelligence in uno scenario complesso, costituito da un gruppo societario operante nel settore bancario; tale obiettivo è stato raggiunto con l'utilizzo di Sas Data Integration. Questo programma è in grado di gestire consistenti volumi di dati rendendoli affidabili e fruibili da tutte le realtà dipartimentali aziendali, secondo opportune e precise esigenze: dall’analisi qualitativa dei sistemi sorgente alla raccolta dei dati e loro bonifica, validazione e standardizzazione, alla trasformazione e movimentazione degli stessi

Recurrence quantification analysis of spatio-temporal chaotic transient in a closed unstirred Belousov-Zhabotinsky reaction

We analyse the transient spatio-temporal chaos that we observe in the Belousov-Zhabotinsky reaction performed in a closed unstirred batch reactor by recurrence quantification analysis (RQA). We characterize the chaotic transient by measuring the Lyapunov exponent and the Kaplan-Yorke dimension. The latter shows the fractality of the attractor. The importance of the coupling between hydrodynamics and kinetics for the onset of chaos is also shown

Hyperchaotic qualities of the ball motion in a ball milling device

Ball collisions in milling devices are governed by complex dynamics ruled by impredictable impulsive forces. In this paper, nonlinear dynamics techniques are employed to analyze the time series describing the trajectory of a milling ball in an empty container obtained from a numerical model. The attractor underlying the system dynamics was reconstructed by the time delay method. In order to characterize the system dynamics the calculation of the spectrum of Lyapunov exponents was performed. Six Lyapunov exponents, divided into two terns with opposite sign, were obtained. The detection of the positive tern demonstrates the occurrence of the hyperchaotic qualities of the ball motion. A fractal Lyapunov dimension, equal to 5.62, was also obtained confirming the strange features of the attractor

Bifurcations in spiral tip dynamics induced by natural convection in the Belousov–Zhabotinsky reaction

The transition to spatial-temporal complexity exhibited by spiral waves under the effect of gravitational field in the Belousov–Zhabotinsky reaction is numerically studied on the basis of spiral tip dynamics. Successive transformations in tip trajectories are characterized as a function of the hydrodynamical parameter and attributed to a Ruelle–Takens–Newhouse scenario to chaos. The analysis describes the emergence of complexity in terms of the interplay between the evolution of the velocity field and concentration waves. In particular, (i) by mapping the tip motion in relation to some hydrodynamical pseudopotentials, the general mechanism by which the velocity field affects the tip trajectory is pointed out, and, (ii) by comparing the dynamical evolutions of local and mean properties associated with the inhomogeneous structures and to the velocity field, a surprising correlation is found. The results suggest that the reaction-diffusion-convection (RDC) coupling addresses the system to some general regimes, whose nature is imposed by the hydrodynamical contribution. More generally, RDC coupling would be formalized as the phenomenon that governs the system and drives it to chaos

Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability.

This is the author accepted manuscript. It is currently under an indefinite embargo pending publication by the Public Library of Science.The advancement of high-throughput sequencing (HTS) technologies and the rapid development of numerous analysis algorithms and pipelines in this field has resulted in an unprecedentedly high demand for training scientists in HTS data analysis. Embarking on developing new training materials is challenging for many reasons. Trainers often do not have prior experience in preparing or delivering such materials and struggle to keep them up to date. A repository of curated HTS training materials would support trainers in materials preparation, reduce the duplication of effort by increasing the usage of existing materials, and allow for the sharing of teaching experience among the HTS trainers' community. To achieve this, we have developed a strategy for materials' curation and dissemination. Standards for describing training materials have been proposed and applied to the curation of existing materials. A Git repository has been set up for sharing annotated materials that can now be reused, modified, or incorporated into new courses. This repository uses Git; hence, it is decentralized and self-managed by the community and can be forked/built-upon by all users. The repository is accessible at http://bioinformatics.upsc.se/htmr.COST action SeqAhead (BM1006

Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data

Background: The genome of the fission yeast Schizosaccharomyces pombe has recently been sequenced, setting the stage for the post-genomic era of this increasingly popular model organism. We have built fission yeast microarrays, optimised protocols to improve array performance, and carried out experiments to assess various characteristics of microarrays.|Results: We designed PCR primers to amplify specific probes (180-500 bp) for all known and predicted fission yeast genes, which are printed in duplicate onto separate regions of glass slides together with control elements (similar to13,000 spots/slide). Fluorescence signal intensities depended on the size and intragenic position of the array elements, whereas the signal ratios were largely independent of element properties. Only the coding strand is covalently linked to the slides, and our array elements can discriminate transcriptional direction. The microarrays can distinguish sequences with up to 70% identity, above which cross-hybridisation contributes to the signal intensity. We tested the accuracy of signal ratios and measured the reproducibility of array data caused by biological and technical factors. Because the technical variability is lower, it is best to use samples prepared from independent biological experiments to obtain repeated measurements with swapping of fluorochromes to prevent dye bias. We also developed a script that discards unreliable data and performs a normalization to correct spatial artefacts.|Conclusions: This paper provides data for several microarray properties that are rarely measured. The results define critical parameters for microarray design and experiments and provide a framework to optimise and interpret array data. Our arrays give reproducible and accurate expression ratios with high sensitivity. The scripts for primer design and initial data processing as well as primer sequences and detailed protocols are available from our website

Onset of chaotic dynamics in a ball mill: attractors merging and crisis induced intermittency

In mechanical treatment carried out by ball milling, powder particles are subjected to repeated high-energy mechanical loads which induce heavy plastic deformations together with fracturing and cold-welding events. Owing to the continuous defect accumulation and interface renewal, both structural and chemical transformations occur. The nature and the rate of such transformations have been shown to depend on variables, such as impact velocity and collision frequency that depend, in turn, on the whole dynamics of the system. The characterization of the ball dynamics under different impact conditions is then to be considered a necessary step in order to gain a satisfactory control of the experimental set up. In this paper we investigate the motion of a ball in a milling device. Since the ball motion is governed by impulsive forces acting during each collision, no analytical expression for the complete ball trajectory can be obtained. In addition, mechanical systems exhibiting impacts are strongly nonlinear due to sudden changes of velocities at the instant of impact. Many different types of periodic and chaotic impact motions exist indeed even for simple systems with external periodic excitation forces. We present results of the analysis on the ball trajectory, obtained from a suitable numerical model, under growing degree of impact elasticity. A route to high dimensional chaos is obtained. Crisis and attractors merging are also found

The cellular microscopy phenotype ontology

BACKGROUND: Phenotypic data derived from high content screening is currently annotated using free-text, thus preventing the integration of independent datasets, including those generated in different biological domains, such as cell lines, mouse and human tissues. DESCRIPTION: We present the Cellular Microscopy Phenotype Ontology (CMPO), a species neutral ontology for describing phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is compatible with related ontology efforts, allowing for future cross-species integration of phenotypic data. CMPO was developed following a curator-driven approach where phenotype data were annotated by expert biologists following the Entity-Quality (EQ) pattern. These EQs were subsequently transformed into new CMPO terms following an established post composition process. CONCLUSION: CMPO is currently being utilized to annotate phenotypes associated with high content screening datasets stored in several image repositories including the Image Data Repository (IDR), MitoSys project database and the Cellular Phenotype Database to facilitate data browsing and discoverability