Gas phase Elemental abundances in Molecular cloudS (GEMS) VI. A sulphur journey across star-forming regions: study of thioformaldehyde emission

In the context of the IRAM 30m Large Program GEMS, we present a study of thioformaldehyde in several starless cores located in star-forming filaments of Taurus, Perseus, and Orion. We investigate the influence of the environmental conditions on the abundances of these molecules in the cores, and the effect of time evolution. We have modelled the observed lines of H2CS, HDCS, and D2CS using the radiative transfer code RADEX. We have also used the chemical code Nautilus to model the evolution of these species depending on the characteristics of the starless cores. We derive column densities and abundances for all the cores. We also derive deuterium fractionation ratios, Dfrac, to determine and compare the evolutionary stage between different parts of each star-forming region. Our results indicate that the north region of the B213 filament in Taurus is more evolved than the south, while the north-eastern part of Perseus presents an earlier evolutionary stage than the south-western zone. Model results also show that Dfrac decreases with the cosmic-ray ionisation rate, while it increases with density and with the degree of sulphur depletion. In particular, we only reproduce the observations when the initial sulphur abundance in the starless cores is at least one order of magnitude lower than the solar elemental sulphur abundance. The progressive increase in HDCS/H2CS and D2CS/H2CS with time makes these ratios powerful tools for deriving the chemical evolutionary stage of starless cores. However, they cannot be used to derive the temperature of these regions, since both ratios present a similar evolution at two different temperature ranges (7-11 K and 15-19 K). Regarding chemistry, (deuterated) thioformaldehyde is mainly formed through gas-phase reactions (double-replacement and neutral-neutral displacement reactions), while surface chemistry plays an important role as a destruction mechanism.Comment: 31 pages, 26 figure

Gas phase Elemental abundances in Molecular cloudS (GEMS) : III. Unlocking the CS chemistry: the CS plus O reaction

Context. Carbon monosulphide (CS) is among the most abundant gas-phase S-bearing molecules in cold dark molecular clouds. It is easily observable with several transitions in the millimeter wavelength range, and has been widely used as a tracer of the gas density in the interstellar medium in our Galaxy and external galaxies. However, chemical models fail to account for the observed CS abundances when assuming the cosmic value for the elemental abundance of sulfur. Aims. The CS+O -> CO + S reaction has been proposed as a relevant CS destruction mechanism at low temperatures, and could explain the discrepancy between models and observations. Its reaction rate has been experimentally measured at temperatures of 150-400 K, but the extrapolation to lower temperatures is doubtful. Our goal is to calculate the CS+O reaction rate at temperatures Methods. We performed ab initio calculations to obtain the three lowest potential energy surfaces (PES) of the CS+O system. These PESs are used to study the reaction dynamics, using several methods (classical, quantum, and semiclassical) to eventually calculate the CS + O thermal reaction rates. In order to check the accuracy of our calculations, we compare the results of our theoretical calculations for T similar to 150-400 K with those obtained in the laboratory. Results. Our detailed theoretical study on the CS+O reaction, which is in agreement with the experimental data obtained at 150-400 K, demonstrates the reliability of our approach. After a careful analysis at lower temperatures, we find that the rate constant at 10 K is negligible, below 10(-15) cm(3) s(-1), which is consistent with the extrapolation of experimental data using the Arrhenius expression. Conclusions. We use the updated chemical network to model the sulfur chemistry in Taurus Molecular Cloud 1 (TMC 1) based on molecular abundances determined from Gas phase Elemental abundances in Molecular CloudS (GEMS) project observations. In our model, we take into account the expected decrease of the cosmic ray ionization rate, zeta(H2), along the cloud. The abundance of CS is still overestimated when assuming the cosmic value for the sulfur abundance.Peer reviewe

Gas phase Elemental abundances in Molecular cloudS (GEMS) : IV. Observational results and statistical trends

Gas phase Elemental abundances in Molecular CloudS (GEMS) is an IRAM 30 m Large Program designed to provide estimates of the S, C, N, and O depletions and gas ionization degree, X(e(-)), in a selected set of star-forming filaments of Taurus, Perseus, and Orion. Our immediate goal is to build up a complete and large database of molecular abundances that can serve as an observational basis for estimating X(e(-)) and the C, O, N, and S depletions through chemical modeling. We observed and derived the abundances of 14 species ((CO)-C-13, (CO)-O-18, HCO+, (HCO+)-C-13, (HCO+)-O-18, HCN, (HCN)-C-13, HNC, HCS+, CS, SO, (SO)-S-34, H2S, and OCS) in 244 positions, covering the A(V) similar to 3 to similar to 100 mag, n(H-2) similar to a few 10(3) to 10(6) cm(-3), and T-k similar to 10 to similar to 30 K ranges in these clouds, and avoiding protostars, HII regions, and bipolar outflows. A statistical analysis is carried out in order to identify general trends between different species and with physical parameters. Relations between molecules reveal strong linear correlations which define three different families of species: (1) (CO)-C-13 and (CO)-O-18 isotopologs; (2) (HCO+)-C-13, (HCO+)-O-18, H-13 CN, and HNC; and (3) the S-bearing molecules. The abundances of the CO isotopologs increase with the gas kinetic temperature until T-K similar to 15 K. For higher temperatures, the abundance remains constant with a scatter of a factor of similar to 3. The abundances of H-13 CO+, HC18 O+, H-13 CN, and HNC are well correlated with each other, and all of them decrease with molecular hydrogen density, following the law proportional to n(H-2)(-0.8 +/- 0.2). The abundances of S-bearing species also decrease with molecular hydrogen density at a rate of (S-bearing/H)(gas) proportional to n(H-2)(-0.6 +/- 0.1). The abundances of molecules belonging to groups 2 and 3 do not present any clear trend with gas temperature. At scales of molecular clouds, the (CO)-O-18 abundance is the quantity that better correlates with the cloud mass. We discuss the utility of the (CO)-C-13/(CO)-O-18, HCO+/(HCO+)-C-13, and H-13 CO+/(HCN)-C-13 abundance ratios as chemical diagnostics of star formation in external galaxies.Peer reviewe

Gas kinematics of key prebiotic molecules in GV Tau N revealed with an ALMA, PdBI, and Herschel synergy

A large effort has been made to detect warm gas in the planet formation zone of circumstellar discs using space and ground-based near-infrared facilities. GV Tau N, the most obscured component of the GV Tau system, is an outstanding source, being one of the first targets detected in HCN and the only one detected in CH4 so far. Although near-infrared observations have shed light on its chemical content, the physical structure and kinematics of the circumstellar matter remained unknown. We use interferometric images of the HCN 3 -> 2 and (CO)-C-13 3 -> 2 lines, and far-IR observations of (CO)-C-13, HCN, CN, and H2O transitions to discern the morphology, kinematics, and chemistry of the dense gas close to the star. These observations constitute the first detection of H2O towards GV Tau N. Moreover, ALMA high spatial resolution (similar to 7 au) images of the continuum at 1.1mm and the HCN 3 -> 2 line resolve different gas components towards GV Tau N, a gaseous disc with R similar to 25 au, an ionized jet, and one (or two) molecular outflows. The asymmetric morphology of the gaseous disc shows that it has been eroded by the jet. All observations can be explained if GV Tau N is binary, and the primary component has a highly inclined individual disc relative to the circumbinary disc. We discuss the origin of the water and the other molecules emission according to this scenario. In particular, we propose that the water emission would come from the disrupted gaseous disc and the molecular outflows

Gas phase Elemental abundances in Molecular cloudS (GEMS): IV. Observational results and statistical trends

Gas phase Elemental abundances in Molecular CloudS (GEMS) is an IRAM 30 m Large Program designed to provide estimates of the S, C, N, and O depletions and gas ionization degree, X(e-), in a selected set of star-forming filaments of Taurus, Perseus, and Orion. Our immediate goal is to build up a complete and large database of molecular abundances that can serve as an observational basis for estimating X(e-) and the C, O, N, and S depletions through chemical modeling. We observed and derived the abundances of 14 species (13CO, C18O, HCO+, H13CO+, HC18O+, HCN, H13CN, HNC, HCS+, CS, SO, 34SO, H2S, and OCS) in 244 positions, covering the AV ~3 to ~100 mag, n(H2) ~ a few 103 to 106 cm-3, and Tk ~10 to ~30 K ranges in these clouds, and avoiding protostars, HII regions, and bipolar outflows. A statistical analysis is carried out in order to identify general trends between different species and with physical parameters. Relations between molecules reveal strong linear correlations which define three different families of species: (1) 13CO and C18O isotopologs; (2) H13CO+, HC18O+, H13 CN, and HNC; and (3) the S-bearing molecules. The abundances of the CO isotopologs increase with the gas kinetic temperature until TK ~ 15 K. For higher temperatures, the abundance remains constant with a scatter of a factor of ~3. The abundances of H13 CO+, HC18 O+, H13 CN, and HNC are well correlated with each other, and all of them decrease with molecular hydrogen density, following the law ∝ n(H2)-0.8  ±  0.2. The abundances of S-bearing species also decrease with molecular hydrogen density at a rate of (S-bearing/H)gas ∝ n(H2)-0.6  ±  0.1. The abundances of molecules belonging to groups 2 and 3 do not present any clear trend with gas temperature. At scales of molecular clouds, the C18O abundance is the quantity that better correlates with the cloud mass. We discuss the utility of the 13CO/C18O, HCO+/H13CO+, and H13 CO+/H13CN abundance ratios as chemical diagnostics of star formation in external galaxies.Astrodynamics & Space Mission

Ontogenetic variation of food intake and gut evacuation rate in larvae of the doncella Pseudoplatystoma punctifer, as measured using a non-destructive method

Food intake (FI) and gut evacuation (Rg) were measured in larvae of Pseudoplatystoma punctifer (4.518.4 mm SL) fed Artemia nauplii, taking advantage of the translucence of their abdominal region to achieve this in a non-destructive way, using digital photographs and mathematical reconstruction of gut volume content (ellipsoidal and cylindrical models for stomach and intestine respectively). The inaccuracy of the method, with reference to counts of nauplii following fish dissection, was low (2.9 +/- 1.5%) and independent of fish size (P = 0.6153). Pigmentation hampered measurement in fish >1819 mm SL. Anaesthesia was needed in fish >9.5 mm SL, thereby preventing the measurement of Rg in individual fish. The FI increased rapidly during the ontogeny, passing from <7% M at 0.6 mg, to 14% M at 1 mg and 21% M at 1540 mg, and then decreased slightly in larger fish. At 28.5 degrees C, Rg (% M h(-1)) was modelled as Rg = -8.22 + 12.11 log FI + 6.30 log M 12.67 (log M)(2) (R-2 = 0.904, d.f. = 27, with FI in% M and M in mg). Extrapolations of Rg over 24 h gave estimates of daily food rations that fit well with those measured in cannibalistic P. punctifer

Linking the dust and chemical evolution: Taurus and Perseus -- New collisional rates for HCN, HNC, and their C, N, and H isotopologues

HCN, HNC, and their isotopologues are ubiquitous molecules that can serve as chemical thermometers and evolutionary tracers to characterize star-forming regions. Despite their importance in carrying information that is vital to studies of the chemistry and evolution of star-forming regions, the collision rates of some of these molecules have not been available for rigorous studies in the past. We perform an up-to-date gas and dust chemical characterization of two different star-forming regions, TMC 1-C and NGC 1333-C7, using new collisional rates of HCN, HNC, and their isotopologues. We investigated the possible effects of the environment and stellar feedback in their chemistry and their evolution. With millimeter observations, we derived their column densities, the C and N isotopic fractions, the isomeric ratios, and the deuterium fractionation. The continuum data at 3 mm and 850 μm allowed us to compute the emissivity spectral index and look for grain growth as an evolutionary tracer. The H13CN/HN13C ratio is anticorrelated with the deuterium fraction of HCN, thus it can readily serve as a proxy for the temperature. The spectral index (β∼1.34−2.09) shows a tentative anticorrelation with the H13CN/HN13C ratio, suggesting grain growth in the evolved, hotter, and less deuterated sources. Unlike TMC 1-C, the south-to-north gradient in dust temperature and spectral index observed in NGC 1333-C7 suggests feedback from the main NGC 1333 cloud. With this up-to-date characterization of two star-forming regions, we found that the chemistry and the physical properties are tightly related. The dust temperature, deuterium fraction, and the spectral index are complementary evolutionary tracers. The large-scale environmental factors may dominate the chemistry and evolution in clustered star-forming regions