Resilience of the Internet of Things (IoT) from an Information Assurance (IA) Perspective

Internet infrastructure developments and the rise of the IoT Socio-Technical Systems (STS) have frequently generated more unsecure protocols to facilitate the rapid intercommunication between the plethoras of IoT devices. Whereas, current development of the IoT has been mainly focused on enabling and effectively meeting the functionality requirement of digital-enabled enterprises we have seen scant regard to their IA architecture, marginalizing system resilience with blatant afterthoughts to cyber defence. Whilst interconnected IoT devices do facilitate and expand information sharing; they further increase of risk exposure and potential loss of trust to their Socio-Technical Systems. A change in the IoT paradigm is needed to enable a security-first mind-set; if the trusted sharing of information built upon dependable resilient growth of IoT is to be established and maintained. We argue that Information Assurance is paramount to the success of IoT, specifically its resilience and dependability to continue its safe support for our digital economy

IDA: An implicit, parallelizable method for calculating drainage area

Models of landscape evolution or hydrological processes typically depend on the accurate determination of upslope drainage area from digital elevation data, but such calculations can be very computationally demanding when applied to high-resolution topographic data. To overcome this limitation, we propose calculating drainage area in an implicit, iterative manner using linear solvers. The basis of this method is a recasting of the flow routing problem as a sparse system of linear equations, which can be solved using established computational techniques. This approach is highly parallelizable, enabling data to be spread over multiple computer processors. Good scalability is exhibited, rendering it suitable for contemporary high-performance computing architectures with many processors, such as graphics processing units (GPUs). In addition, the iterative nature of the computational algorithms we use to solve the linear system creates the possibility of accelerating the solution by providing an initial guess, making the method well suited to iterative calculations such as numerical landscape evolution models. We compare this method with a previously proposed parallel drainage area algorithm and present several examples illustrating its advantages, including a continent-scale flow routing calculation at 3 arc sec resolution, improvements to models of fluvial sediment yield, and acceleration of drainage area calculations in a landscape evolution model. We additionally describe a modification that allows the method to be used for parallel basin delineation.National Science Foundation (U.S.). Geomorphology and Land-Use Dynamics Program (Award EAR-0951672

Interactions between global and local stressors of ecosystems determine management effectiveness in cumulative impact mapping

Ai

How long can fisheries management delay action in response to ecosystem and climate change?

Sustainable management of fisheries is often compromised by management delaying implementation of regulations that reduce harvest, in order to maintain higher catches in the short term. Decreases or increases in fish population growth rate driven by environmental change, including ecosystem and climate change, affect the harvest that can be taken sustainably. If not acted on rapidly, environmental change could result in unsustainable fishing or missed opportunity for higher catches. Using simulation models of harvested fish populations influenced by environmental change, we explore how long fisheries managers can afford to wait before changing harvest regulations in response to changes in population growth. If environmental change causes population declines, delays greater than five years increase the probability of population collapse. Species with fast and highly variable population growth rates are more susceptible to collapse under delays and should be a priority for revised management where delays occur. Generally, the long-term cost of delay, in terms of lost fishing opportunity, exceeds the short-term benefits of overfishing. Lowering harvest limits and monitoring for environmental change can alleviate the impact of delays; however, these measures may be more costly than reducing delays. We recommend that management systems that allow rapid responses to population growth changes be enacted for fisheries management to adapt to ecosystem and climate change

Identification and analysis of mutational hotspots in oncogenes and tumour suppressors

Background: The key to interpreting the contribution of a disease-associated mutation in the development and progression of cancer is an understanding of the consequences of that mutation both on the function of the affected protein and on the pathways in which that protein is involved. Protein domains encapsulate function and position-specific domain based analysis of mutations have been shown to help elucidate their phenotypes. Results: In this paper we examine the domain biases in oncogenes and tumour suppressors, and find that their domain compositions substantially differ. Using data from over 30 different cancers from whole-exome sequencing cancer genomic projects we mapped over one million mutations to their respective Pfam domains to identify which domains are enriched in any of three different classes of mutation; missense, indels or truncations. Next, we identified the mutational hotspots within domain families by mapping small mutations to equivalent positions in multiple sequence alignments of protein domains We find that gain of function mutations from oncogenes and loss of function mutations from tumour suppressors are normally found in different domain families and when observed in the same domain families, hotspot mutations are located at different positions within the multiple sequence alignment of the domain. Conclusions: By considering hotspots in tumour suppressors and oncogenes independently, we find that there are different specific positions within domain families that are particularly suited to accommodate either a loss or a gain of function mutation. The position is also dependent on the class of mutation. We find rare mutations co-located with well-known functional mutation hotspots, in members of homologous domain superfamilies, and we detect novel mutation hotspots in domain families previously unconnected with cancer. The results of this analysis can be accessed through the MOKCa database (http://strubiol.icr.ac.uk/ extra/MOKCa)

Divergent gold-catalysed reactions of cyclopropenylmethyl sulfonamides with tethered heteroaromatics

Cyclopropenylmethyl sulfonamides with tethered heteroaromatics have been demonstrated to undergo divergent gold-catalysed cyclisation reactions. A formal dearomative (4+3) cycloaddition takes place with furan-tethered substrates, yielding densely functionalised 5,7-fused heterocycles related to the bioactive curcusone natural products. Indole-tethered substrates display divergent reactivity giving biologically important tetrahydro-β-carbolines via a Friedel-Crafts mechanism