298 research outputs found

    Effect of Non-Coding RNA on Post-Transcriptional Gene Silencing of Alzheimer Disease

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    A large amount of hidden biological information is contained in the human genome, which is not expressed or revealed in the form of proteins; the usual end product form of gene expression. Instead, most of such information is in the form of non-coding RNAs (ncRNAs). ncRNAs correspond to genes that are transcribed, but do not get translated into proteins. This part of the genome was, till recently, considered as ‘junk’. The term ‘junk’ implied lack of any discernible function of these RNA. More than 98% of the human genomic size encompasses these non-coding RNAs. But, recent research has evidently brought out the indispensible contribution of non-coding RNA in controlling and regulating gene expression. ncRNA such as siRNAs and microRNAs have been reported to greatly help in causing post-transcriptional gene silencing (PTGS) in cells through RNA interference (RNAi) pathway. In this work, we have investigated the possibility of using siRNAs and microRNAs to aid in gene silencing of early onset Alzheimer’s disease genes. 
Alzheimer’s disease specific mutations and their corresponding positions in mRNA have been identified for six genes; Presenilin-1, Presenilin-2, APP (amyloid beta precursor protein), APBB3, BACE-1 and PSENEN. 

Small interfering RNAs (siRNAs) that can cause PTGS through RNA interference pathway have been designed. RNA analysis has been done to verify complementarity of antisense siRNA sequence with target mRNA sequence. Interaction studies have been done computationally between these antisense siRNA strands and seven Argonaute proteins. From the interaction studies, only one of the seven Argonaute proteins; 1Q8K, was found to have interaction with the siRNAs indicating the importance and uniqueness of this particular protein in RISC (RNA induced silencing complex). 

The interaction studies have been carried out for the microRNAs also. Out of the 700 mature human microRNAs collected, 394 microRNAs have been identified to show partial complementarity with their target sequence on PSEN-1 mRNA. Of these 394, five microRNAs have shown partial complementarity to early onset Alzheimer’s disease specific mutations in PSEN-1 mRNA. Interaction studies have been done between these microRNAs and Argonaute proteins. Thus, design, characterization and analysis of ncRNAs that contribute to post transcriptional gene silencing of Alzheimer’s disease have been achieved.
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    The Effect of Electrostatics on the Line Tension at the Edge of a Bilayer

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    Emulsion characterization via microfluidic devices : A review on interfacial tension and stability to coalescence

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    Emulsions have gained significant importance in many industries including foods, pharmaceuticals, cosmetics, health care formulations, paintings, polymer blends and oils. During emulsion generation, collisions can occur between newly-generated droplets, which may lead to coalescence between the droplets. The extent of coalescence is driven by properties of dispersed and continuous phases, e.g. density, viscosity, ion strength and pH, and system conditions, e.g. temperature, pressure or any external applied forces. In addition, the diffusion and adsorption behaviors of emulsifiers which govern the dynamic interfacial tension of the forming droplets, the surface potential, and the duration and frequency of the droplet collisions, contribute to the overall rate of coalescence. An understanding of these complex behaviors, particularly those of interfacial tension and droplet coalescence during emulsion generation, is critical for the design of an emulsion with desirable properties and the optimization of the processing conditions. However, in many cases, the time scales over which these phenomena occur are extremely short, typically a fraction of a second, which makes their accurate determination by conventional analytical methods extremely challenging. In the past few years, with advances in microfluidic technology, many attempts have demonstrated that microfluidic systems, characterized by micrometer-size channels, can be successfully employed to precisely characterize these properties of emulsions. In this review, current applications of microfluidic devices to determine the equilibrium and dynamic interfacial tension during the droplet formation, and to investigate the coalescence stability of dispersed droplets applicable to the processing and storage of emulsions, are discussed.Peer reviewe

    Sol-gel synthesized plasmonic nanoparticles and their integration into dye sensitized solar cells

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    In the present study, we synthesized silver nanoparticles in titanosilicate matrix through low cost non-hydrolytic sol-gel method using titanium isopropoxide (TIP), tetraethylorthosilicate (TEOS, (Si(OC2H5)4) and ethanol (C2H5OH) as solvents. These were investigated for the plasmonic effect of nanoparticles in dye sensitized solar cells (DSSC). The fabricated dye-sensitized solar cells with Ag: SiO2-TiO2 films coated in fluorine doped tin oxide (FTO) glass plate with dye of amaranthus red shows an improved output voltage. The samples were optically and structurally well studied by absorption spectroscopy, Fourier transform infrared spectroscopy(FTIR), X-Ray diffraction (XRD) and transmission electron microscopy(TEM). The XRD studies confirmed the crystalline nature of TiO2 and Ag.publishe
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