Exceptional sperm cooperation in the wood mouse

Spermatozoa from a single male will compete for fertilization of ova with spermatozoa from another male when present in the female reproductive tract at the same time. Close genetic relatedness predisposes individuals towards altruism, and as haploid germ cells of an ejaculate will have genotypic similarity of 50%, it is predicted that spermatozoa may display cooperation and altruism to gain an advantage when inter-male sperm competition is intense. We report here the probable altruistic behaviour of spermatozoa in an eutherian mammal. Spermatozoa of the common wood mouse, Apodemus sylvaticus, displayed a unique morphological transformation resulting in cooperation in distinctive aggregations or 'trains' of hundreds or thousands of cells, which significantly increased sperm progressive motility. Eventual dispersal of sperm trains was associated with most of the spermatozoa undergoing a premature acrosome reaction. Cells undergoing an acrosome reaction in aggregations remote from the egg are altruistic in that they help sperm transport to the egg but compromise their own fertilizing ability

Petrogenetic significance of chromian spinels from the Sudbury Igneous Complex, Ontario, Canada

Chromian spinels occur in mafic-ultramafic inclusions in the Sublayer of the Sudbury Igneous Complex (SIC) as well as in mafic-ultramafic rocks in the immediate footwall of the Sublayer. The host rocks are pyroxenite and melanorite with minor dunite, harzburgite, and melatroctolite. As common accessory phases in these rocks, the chromian spinels display euhedral or subhedral forms and are included in olivine and orthopyroxene. Chromian spinel grains generally have ilmenite lamellae and contain abundant inclusions (zircon, olivine, diopside, plagioclase, biotite, and sulfide). All the chromian spinels have similar trace element abundances and are rich in TiO2 (0.5-15 wt.%). They have constant Cr# (100Cr/(Cr + Al)) (55-70) and exhibit a continuum in composition that traverses the normal fields of spinels in a Al-(Fe3+ + 2Ti)-Cr triangular diagram. This continuum extends to that of the composition of chromian magnetite in the host norite matrix to the mafic -ultramafic inclusions. This continuum in composition of the spinels suggests that the noritic matrix to the Sublayer formed from the same magma as the inclusions. A positive correlation between the Cr and Al contents of the spinels was probably produced by dilution of these elements by Fe3+ contributed, perhaps, by a plagioclase-saturated melt. Zircon inclusions in a chromian spinel grain reflect incorporation of crustal, felsic materials into the magma before crystallization of chromian spinel. The chemical characteristics and mineral inclusions of the spinels suggest that the Sublayer formed in response to magma mixing. It is suggested that subsequent to the formation of the crustal melt, mantle-derived high-Mg magmas mixed vigourously with this and generated the magmatic sulfides that eventually formed the Ni - Cu - platinum-group elements sulfide ore deposits. Some of the early crystallization products of the high-Mg magma settled to the chamber floor, where they partially mixed with the crustal melt and formed the mafic - ultramafic inclusions and footwall complexes.published_or_final_versio

Investigation of SLA4A3 as a candidate gene for human retinal disease.

SLC4A3 has been shown to cause retinal degeneration in a genetically engineered knockout mouse, and in a naturally occurring form of canine progressive retinal atrophy considered to be the equivalent of retinitis pigmentosa in humans (RP). This study was undertaken to investigate if SLC4A3 coding variants were implicated in human retinal degeneration. SLC4A3 exons were amplified and sequenced in 200 patients with autosomal recessive retinal degeneration who had no known molecular diagnosis for their condition, which included 197 unrelated individuals with suspected RP and three individuals with other forms of retinal disease. Three rare variants were identified that were predicted to be potentially pathogenic, however each variant was heterozygous in a single patient and therefore not considered disease-causing in isolation. Of these three variants, SNP-3 was the rarest, with an allele frequency of 7.06 x 10(-5) (>46,000 exomes from the ExAC database). In conclusion, no compound heterozygous or homozygous potentially pathogenic variants were identified that would account for recessive RP or retinal degeneration in this cohort, however the possibility remains that the rare variants identified could be acting with as yet undiscovered mutations in introns or regulatory regions. SLC4A3 remains an excellent candidate gene for human retinal degeneration, and with the advent of whole exome and whole genome sequencing of cohorts of molecularly unsolved patients with syndromic and non-syndromic forms of retinal degeneration, SLC4A3 may yet be implicated in human disease

Long-term nutrient reductions lead to the unprecedented recovery of a temperate coastal region

Humans strongly impact the dynamics of coastal systems, yet surprisingly few studies mechanistically link management of anthropogenic stressors and successful restoration of nearshore habitats over large spatial and temporal scales. Such examples are sorely needed to ensure the success of ecosystem restoration efforts worldwide. Here, we unite 30 consecutive years of watershed modeling, biogeochemical data, and comprehensive aerial surveys of Chesapeake Bay, United States to quantify the cascading effects of anthropogenic impacts on submersed aquatic vegetation (SAV), an ecologically and economically valuable habitat. We employ structural equation models to link land use change to higher nutrient loads, which in turn reduce SAV cover through multiple, independent pathways. We also show through our models that high biodiversity of SAV consistently promotes cover, an unexpected finding that corroborates emerging evidence from other terrestrial and marine systems. Due to sustained management actions that have reduced nitrogen concentrations in Chesapeake Bay by 23% since 1984, SAV has regained 17,000 ha to achieve its highest cover in almost half a century. Our study empirically demonstrates that nutrient reductions and biodiversity conservation are effective strategies to aid the successful recovery of degraded systems at regional scales, a finding which is highly relevant to the utility of environmental management programs worldwide

By hook or by crook? Morphometry, competition and cooperation in rodent sperm

Background Sperm design varies enormously across species and sperm competition is thought to be a major factor influencing this variation. However, the functional significance of many sperm traits is still poorly understood. The sperm of most murid rodents are characterised by an apical hook of the sperm head that varies markedly in extent across species. In the European woodmouse Apodemus sylvaticus (Muridae), the highly reflected apical hook of sperm is used to form sperm groups, or “trains,” which exhibited increased swimming velocity and thrusting force compared to individual sperm. Methodology/Principal Findings Here we use a comparative study of murine rodent sperm and demonstrate that the apical hook and sperm cooperation are likely to be general adaptations to sperm competition in rodents. We found that species with relatively larger testes, and therefore more intense sperm competition, have a longer, more reflected apical sperm hook. In addition, we show that sperm groups also occur in rodents other than the European woodmouse. Conclusions Our results suggest that in rodents sperm cooperation is more widespread than assumed so far and highlight the importance of diploid versus haploid selection in the evolution of sperm design and function

Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions

<p>Abstract</p> <p>Background</p> <p>Genome-wide association studies are becoming the de facto standard in the genetic analysis of common human diseases. Given the complexity and robustness of biological networks such diseases are unlikely to be the result of single points of failure but instead likely arise from the joint failure of two or more interacting components. The hope in genome-wide screens is that these points of failure can be linked to single nucleotide polymorphisms (SNPs) which confer disease susceptibility. Detecting interacting variants that lead to disease in the absence of single-gene effects is difficult however, and methods to exhaustively analyze sets of these variants for interactions are combinatorial in nature thus making them computationally infeasible. Efficient algorithms which can detect interacting SNPs are needed. ReliefF is one such promising algorithm, although it has low success rate for noisy datasets when the interaction effect is small. ReliefF has been paired with an iterative approach, Tuned ReliefF (TuRF), which improves the estimation of weights in noisy data but does not fundamentally change the underlying ReliefF algorithm. To improve the sensitivity of studies using these methods to detect small effects we introduce Spatially Uniform ReliefF (SURF).</p> <p>Results</p> <p>SURF's ability to detect interactions in this domain is significantly greater than that of ReliefF. Similarly SURF, in combination with the TuRF strategy significantly outperforms TuRF alone for SNP selection under an epistasis model. It is important to note that this success rate increase does not require an increase in algorithmic complexity and allows for increased success rate, even with the removal of a nuisance parameter from the algorithm.</p> <p>Conclusion</p> <p>Researchers performing genetic association studies and aiming to discover gene-gene interactions associated with increased disease susceptibility should use SURF in place of ReliefF. For instance, SURF should be used instead of ReliefF to filter a dataset before an exhaustive MDR analysis. This change increases the ability of a study to detect gene-gene interactions. The SURF algorithm is implemented in the open source Multifactor Dimensionality Reduction (MDR) software package available from <url>http://www.epistasis.org</url>.</p

Using a single-channel reference with the MBSTOI binaural intelligibility metric

In order to assess the intelligibility of a target signal in a noisy environment, intrusive speech intelligibility metrics are typically used. They require a clean reference signal to be available which can be difficult to obtain especially for binaural metrics like the modified binaural short time objective intelligibility metric (MBSTOI). We here present a hybrid version of MBSTOI that incorporates a deep learning stage that allows the metric to be computed with only a single-channel clean reference signal. The models presented are trained on simulated data containing target speech, localised noise, diffuse noise, and reverberation. The hybrid output metrics are then compared directly to MBSTOI to assess performances. Results show the performance of our single channel reference vs MBSTOI. The outcome of this work offers a fast and flexible way to generate audio data for machine learning (ML) and highlights the potential for low level implementation of ML into existing tools