Simulating the impacts of climate change on ecosystems: the importance of mortality

Griffith Sciences, Griffith School of EnvironmentNo Full Tex

Modelling dimethylsulphide production at the Bermuda Atlantic time series (BATS)

Dimethylsulphide (DMS) is produced by upper ocean ecosystems and emitted to the atmosphere where it may have an important role in climate regulation. Several attempts to quantify the role of DMS in climate change have been undertaken in modeling studies. We examine a model of biogenic DMS production and describe its endogenous dynamics and sensitivities. We extend the model to develop a one-dimensional version that more accurately resolves the important processes of the mixed layer in determining the ecosystem dynamics. Comparisons of the results of the one-dimensional model with vertical profiles of DMS in the upper ocean measured at the Bermuda Atlantic Time Series suggest that the model represents the interaction between the biological and physical processes well. Our analysis of the model confirms its veracity and provides insights into the important processes determining DMS concentration in the oceans

General polarization modes for the Rosen gravitational wave

Strong-field gravitational plane waves are often represented in either the Rosen or Brinkmann forms. While these two metric ansatze are related by a coordinate transformation, so that they should describe essentially the same physics, they rather puzzlingly seem to treat polarization states quite differently. Both ansatze deal equally well with + and X linear polarizations, but there is a qualitative difference in they way they deal with circular, elliptic, and more general polarization states. In this article we will develop a general formalism for dealing with arbitrary polarization states in the Rosen form of the gravitational wave metric, representing an arbitrary polarization by a trajectory in a suitably defined two dimensional hyperbolic plane.Comment: V1: 12 pages, no figures. V2: still 12 pages, reformatted. Minor technical edits, discussion of Riemann tensor added, two references added, no significant physics changes. This version accepted for publication in Classical and Quantum Gravit

Derivative based global sensitivity measures

The method of derivative based global sensitivity measures (DGSM) has recently become popular among practitioners. It has a strong link with the Morris screening method and Sobol' sensitivity indices and has several advantages over them. DGSM are very easy to implement and evaluate numerically. The computational time required for numerical evaluation of DGSM is generally much lower than that for estimation of Sobol' sensitivity indices. This paper presents a survey of recent advances in DGSM concerning lower and upper bounds on the values of Sobol' total sensitivity indices $S\_{i}^{tot}$. Using these bounds it is possible in most cases to get a good practical estimation of the values of $S\_{i}^{tot}$. Several examples are used to illustrate an application of DGSM

Linking obligate mutualism models in an extended consumer-resource framework

A simple model of obligate mutualist populations is presented in an extended consumer-resource (ECR) framework to resolve some of the deficiencies of traditional models. Varying parameters representing the costs of providing a mutualist benefit allows the model to smoothly and stably transition between many existing models of obligate mutualism. Varying density-independent mortality parameters allows us to include or exclude Allee effects, while varying an obligation parameter allows us to smoothly transition between facultative and obligate mutualism. Explicit and exact accounting of mutualism benefits, measured in terms of a finite total amount of cycling limiting resource, is shown to lead to population models that bridge between apparently incompatible models of obligate mutualism. This brings models of obligate mutualism into the Conservative Normal theoretical framework alongside models of competition, mixotrophy and predation

Immunohistochemical detection of macrophage migration inhibitory factor in fetal and adult bovine epididymis: Release by the apocrine secretion mode?

Originally defined as a lymphokine inhibiting the random migration of macrophages, the macrophage migration inhibitory factor (MIF) is an important mediator of the host response to infection. Beyond its function as a classical cytokine, MIF is currently portrayed as a multifunctional protein with growth-regulating properties present in organ systems beyond immune cells. In previous studies, we detected substantial amounts of MIF in the rat epididymis and epididymal spermatozoa, where it appears to play a role during post-testicular sperm maturation and the acquisition of fertilization ability. To explore its presence in other species not yet examined in this respect, we extended the range of studies to the bull. Using a polyclonal antibody raised against MIF purified from bovine eye lenses, we detected MIF in the epithelium of the adult bovine epididymis with the basal cells representing a prominently stained cell type. A distinct accumulation of MIF at the apical cell pole of the epithelial cells and in membranous vesicles localized in the lumen of the epididynnal duct was obvious. In the fetal bovine epididymis, we also detected MIF in the epithelium, whereas MIF accumulation was evident at the apical cell surface and in apical protrusions. By immuno-electron microscopy of the adult bovine epididymis, we localized MIF in apical protrusions of the epithelial cells and in luminal membrane-bound vesicles that were found in close proximity to sperm cells. Although the precise origin of the MIF-containing vesicles remains to be delineated, our morphological observations support the hypothesis that they become detached from the apical surface of the epididymal epithelial cells. Additionally, an association of MIF with the outer dense fibers of luminal spermatozoa was demonstrated. Data obtained in this study suggest MIF release by an apocrine secretion mode in the bovine epididymis. Furthermore, MIF localized in the basal cells of the epithelium and in the connective tissue could be responsible for regulating the migration of macrophages in order to avoid contact of immune cells with spermatozoa that carry a wide range of potent antigens. Copyright (c) 2006 S. Karger AG, Basel

Heavy Flavours at Colliders

I review some topics in the production and decays of heavy flavours that are relevant for collider physics. In particular, I discuss the present status and some recent progress related to masses, parton densities and fragmentation functions of heavy quarks, as well as threshold resummation, polarized onium production at high transverse momentum, and a factorization theorem for $B \to\pi\pi$ decays.Comment: 12 pages. Plenary talk given at UK Phenomenology Workshop on Collider Physics, Durham, England, 19-24 Sep 1999 Comments and references adde

Search for the Supersymmetric Partner of the Top-Quark in ppˉp \bar{p} Collisions at s=1.8TeV\sqrt{s} = 1.8 {\rm TeV}

We report on a search for the supersymmetric partner of the top quark (stop) produced in $t \bar{t}$ events using $110 {\rm pb}^{-1}$ of $p \bar{p}$ collisions at $\sqrt{s} = 1.8 {\rm TeV}$ recorded with the Collider Detector at Fermilab. In the case of a light stop squark, the decay of the top quark into stop plus the lightest supersymmetric particle (LSP) could have a significant branching ratio. The observed events are consistent with Standard Model $t \bar{t}$ production and decay. Hence, we set limits on the branching ratio of the top quark decaying into stop plus LSP, excluding branching ratios above 45% for a LSP mass up to 40 {\rm GeV/c}$^{2}$.Comment: 11 pages, 4 figure

Measurement of the Associated γ+μ±\gamma + \mu^\pm Production Cross Section in ppˉp \bar p Collisions at s=1.8\sqrt{s} = 1.8 TeV

We present the first measurement of associated direct photon + muon production in hadronic collisions, from a sample of 1.8 TeV $p \bar p$ collisions recorded with the Collider Detector at Fermilab. Quantum chromodynamics (QCD) predicts that these events are primarily from the Compton scattering process $cg \to c\gamma$, with the final state charm quark producing a muon. Hence this measurement is sensitive to the charm quark content of the proton. The measured cross section of $29\pm 9 pb^{-1}$ is compared to a leading-order QCD parton shower model as well as a next-to-leading-order QCD calculation.Comment: 12 pages, 4 figures Added more detailed description of muon background estimat

Evolutionary connectionism: algorithmic principles underlying the evolution of biological organisation in evo-devo, evo-eco and evolutionary transitions

The mechanisms of variation, selection and inheritance, on which evolution by natural selection depends, are not fixed over evolutionary time. Current evolutionary biology is increasingly focussed on understanding how the evolution of developmental organisations modifies the distribution of phenotypic variation, the evolution of ecological relationships modifies the selective environment, and the evolution of reproductive relationships modifies the heritability of the evolutionary unit. The major transitions in evolution, in particular, involve radical changes in developmental, ecological and reproductive organisations that instantiate variation, selection and inheritance at a higher level of biological organisation. However, current evolutionary theory is poorly equipped to describe how these organisations change over evolutionary time and especially how that results in adaptive complexes at successive scales of organisation (the key problem is that evolution is self-referential, i.e. the products of evolution change the parameters of the evolutionary process). Here we first reinterpret the central open questions in these domains from a perspective that emphasises the common underlying themes. We then synthesise the findings from a developing body of work that is building a new theoretical approach to these questions by converting well-understood theory and results from models of cognitive learning. Specifically, connectionist models of memory and learning demonstrate how simple incremental mechanisms, adjusting the relationships between individually-simple components, can produce organisations that exhibit complex system-level behaviours and improve the adaptive capabilities of the system. We use the term “evolutionary connectionism” to recognise that, by functionally equivalent processes, natural selection acting on the relationships within and between evolutionary entities can result in organisations that produce complex system-level behaviours in evolutionary systems and modify the adaptive capabilities of natural selection over time. We review the evidence supporting the functional equivalences between the domains of learning and of evolution, and discuss the potential for this to resolve conceptual problems in our understanding of the evolution of developmental, ecological and reproductive organisations and, in particular, the major evolutionary transitions