Evaluation of the BCS Approximation for the Attractive Hubbard Model in One Dimension

The ground state energy and energy gap to the first excited state are calculated for the attractive Hubbard model in one dimension using both the Bethe Ansatz equations and the variational BCS wavefunction. Comparisons are provided as a function of coupling strength and electron density. While the ground state energies are always in very good agreement, the BCS energy gap is sometimes incorrect by an order of magnitude, particularly at half-filling. Finite size effects are also briefly discussed for cases where an exact solution in the thermodynamic limit is not possible. In general, the BCS result for the energy gap is poor compared to the exact result.Comment: 25 pages, 5 Postscript figure

A Rapid Gamma-Ray Glow Flux Reduction Observed From 20 km Altitude

Two gamma-ray glows were observed by a high-altitude NASA ER-2 aircraft flying at 20 km altitude over a thunderstorm in Colorado, USA. The flux of the first glow rapidly intensified and then abruptly decreased within a few tens of milliseconds. On a timescale of seconds, the flux decrease occurred simultaneously with a hybrid intra-cloud/cloud-to-ground lightning discharge beneath the aircraft. However, a more detailed analysis of the discharge dynamics indicated that the discharge activity was unusually calm during the actual period of the flux decrease. The lightning was observed with on-board antennas, optical sensor, and ground-based lightning mapping and location networks. Its closest activity was 12 km away from the aircraft, below and slightly ahead the course. The gamma-ray flux reduction happened roughly in the middle of the lightning development process. The glow spectral analysis for the periods of a weak and strong flux enhancement has been done. The spectra were found to be background-like and similar to each other.publishedVersio

CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice

KEY MESSAGE: CRISPR-Cas9/Cpf1 system with its unique gene targeting efficiency, could be an important tool for functional study of early developmental genes through the generation of successful knockout plants. The introduction and utilization of systems biology approaches have identified several genes that are involved in early development of a plant and with such knowledge a robust tool is required for the functional validation of putative candidate genes thus obtained. The development of the CRISPR-Cas9/Cpf1 genome editing system has provided a convenient tool for creating loss of function mutants for genes of interest. The present study utilized CRISPR/Cas9 and CRISPR-Cpf1 technology to knock out an early developmental gene EPFL9 (Epidermal Patterning Factor like-9, a positive regulator of stomatal development in Arabidopsis) orthologue in rice. Germ-line mutants that were generated showed edits that were carried forward into the T2 generation when Cas9-free homozygous mutants were obtained. The homozygous mutant plants showed more than an eightfold reduction in stomatal density on the abaxial leaf surface of the edited rice plants. Potential off-target analysis showed no significant off-target effects. This study also utilized the CRISPR-LbCpf1 (Lachnospiracae bacterium Cpf1) to target the same OsEPFL9 gene to test the activity of this class-2 CRISPR system in rice and found that Cpf1 is also capable of genome editing and edits get transmitted through generations with similar phenotypic changes seen with CRISPR-Cas9. This study demonstrates the application of CRISPR-Cas9/Cpf1 to precisely target genomic locations and develop transgene-free homozygous heritable gene edits and confirms that the loss of function analysis of the candidate genes emerging from different systems biology based approaches, could be performed, and therefore, this system adds value in the validation of gene function studies

Risk profiles and one-year outcomes of patients with newly diagnosed atrial fibrillation in India: Insights from the GARFIELD-AF Registry.

BACKGROUND: The Global Anticoagulant Registry in the FIELD-Atrial Fibrillation (GARFIELD-AF) is an ongoing prospective noninterventional registry, which is providing important information on the baseline characteristics, treatment patterns, and 1-year outcomes in patients with newly diagnosed non-valvular atrial fibrillation (NVAF). This report describes data from Indian patients recruited in this registry. METHODS AND RESULTS: A total of 52,014 patients with newly diagnosed AF were enrolled globally; of these, 1388 patients were recruited from 26 sites within India (2012-2016). In India, the mean age was 65.8 years at diagnosis of NVAF. Hypertension was the most prevalent risk factor for AF, present in 68.5% of patients from India and in 76.3% of patients globally (P < 0.001). Diabetes and coronary artery disease (CAD) were prevalent in 36.2% and 28.1% of patients as compared with global prevalence of 22.2% and 21.6%, respectively (P < 0.001 for both). Antiplatelet therapy was the most common antithrombotic treatment in India. With increasing stroke risk, however, patients were more likely to receive oral anticoagulant therapy [mainly vitamin K antagonist (VKA)], but average international normalized ratio (INR) was lower among Indian patients [median INR value 1.6 (interquartile range {IQR}: 1.3-2.3) versus 2.3 (IQR 1.8-2.8) (P < 0.001)]. Compared with other countries, patients from India had markedly higher rates of all-cause mortality [7.68 per 100 person-years (95% confidence interval 6.32-9.35) vs 4.34 (4.16-4.53), P < 0.0001], while rates of stroke/systemic embolism and major bleeding were lower after 1 year of follow-up. CONCLUSION: Compared to previously published registries from India, the GARFIELD-AF registry describes clinical profiles and outcomes in Indian patients with AF of a different etiology. The registry data show that compared to the rest of the world, Indian AF patients are younger in age and have more diabetes and CAD. Patients with a higher stroke risk are more likely to receive anticoagulation therapy with VKA but are underdosed compared with the global average in the GARFIELD-AF. CLINICAL TRIAL REGISTRATION-URL: http://www.clinicaltrials.gov. Unique identifier: NCT01090362

A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies

Large-scale whole-genome sequencing studies have enabled analysis of noncoding rare-variant (RV) associations with complex human diseases and traits. Variant-set analysis is a powerful approach to study RV association. However, existing methods have limited ability in analyzing the noncoding genome. We propose a computationally efficient and robust noncoding RV association detection framework, STAARpipeline, to automatically annotate a whole-genome sequencing study and perform flexible noncoding RV association analysis, including gene-centric analysis and fixed window-based and dynamic window-based non-gene-centric analysis by incorporating variant functional annotations. In gene-centric analysis, STAARpipeline uses STAAR to group noncoding variants based on functional categories of genes and incorporate multiple functional annotations. In non-gene-centric analysis, STAARpipeline uses SCANG-STAAR to incorporate dynamic window sizes and multiple functional annotations. We apply STAARpipeline to identify noncoding RV sets associated with four lipid traits in 21,015 discovery samples from the Trans-Omics for Precision Medicine (TOPMed) program and replicate several of them in an additional 9,123 TOPMed samples. We also analyze five non-lipid TOPMed traits

The role of crustal fertility in the generation of large silicic magmatic systems triggered by intrusion of mantle magma in the deepcrust

The Sesia magmatic system of northwest Italy allows direct study of the links between silicic plutonism and volcanism in the upper crust and the coeval interaction of mafic intrusions with the deep crust. In this paper, we focus on the chemical stratigraphy of the pre-intrusion crust, which can be inferred from the compositions of crustal-contaminated mafic plutonic rocks, restitic crustal material incorporated by the complex, and granitic rocks crystallized from anatectic melts. These data sources independently indicate that the crust was compositionally stratified prior to the intrusion of an 8-km-thick gabbroic to dioritic body known as the Mafic Complex, with mica and K-feldspar abundance decreasing with depth and increasing metamorphic grade. Reconsideration of published zircon age data suggest that the igneous evolution initiated with sporadic pulses at around 295 Ma, when mafic sills intruded deep granulites which provided a minor amount of depleted crustal contaminant, very poor in LIL elements. With accelerated rates of the intrusion, between 292 and 286 m.y, mafic magmas invaded significantly more fertile, amphibolite-facies paragneisses, resulting in increased contamination and generating hybrid rocks with distinct chemistry. At this point, increased anatexis produced a large amount of silicic hybrid melts that fed the incremental growth of upper-crustal plutons and volcanic activity, while the disaggregated restite was largely assimilated once ingested by the growing Mafic Complex. This \u2018\u2018igneous climax\u2019\u2019 was coincident with an increasing rate of intrusion, when the upper Mafic Complex began growing according to the \u2018\u2018gabbro glacier\u2019\u2019 model and, at about the same time, volcanic activity initiated. Cooling lasted millions of years. In the coupled magmatic evolution of the deep and upper crust, the Mafic Complex should be considered more as a large reservoir of heat rather than a source of upper-crustal magma, while the fertility of \u2018\u2018under/intra-plated\u2019\u2019 crust plays a crucial role in governing the generation of large volumes of continental silicic magmas

Duration of a Large Mafic Intrusion and Heat Transfer in the Lower Crust: a SHRIMP U-Pb Zircon Study in the Ivrea-Verbano Zone (Western Alps, Italy)

The Ivrea^Verbano Zone in the western Italian Alps contains one of the world\u2019s classic examples of ponding of mantle-derived, mafic magma in the deep crust. Within it, a voluminous, composite mafic pluton, the Mafic Complex, intruded lower-crustal, high-grade paragneiss of the Kinzigite Formation during Permian^Carboniferous time, and is now exposed in cross-section as a result of Alpine uplift. The age of the intrusion is still debated because the results of geochronological studies in the last three decades on different rock types and with various dating techniques range from 250 to about 300Ma. Sensitive high-resolution ion microprobe (SHRIMP) U^Pb zircon age determinations on 12 samples from several locations within the Mafic Complex were performed to better constrain the age of the igneous event.The results indicate a long history of magma emplacement and cooling, which reconciles the spread in previously published ages. The main intrusive phase took place at 2884Ma, causing a perturbation of the deep-crustal geotherm, which relaxed to the Sm^Nd closure temperature in garnet-free mafic rocks after about 15^20Myr of sub-solidus cooling at c. 270Ma.These results suggest that large, deep crustal plutons, such as those identified geophysically at depths of 10^20 km within extended continental crust (e.g. Yellowstone, Rio Grande Rift, Basin and Range) may have formed rapidly but induced a prolonged thermal perturbation. In addition, the data indicate that a significant thermal event affected the country rock of the Mafic Complex at about 310Ma. The occurrence of an upper amphibolite- to granulite-facies thermal event in the Kinzigite Formation prior to the main intrusive phase of the Mafic Complex has been postulated by several workers, and is corroborated by other geochronological investigations. However, it remains uncertain whether this event (1) was part of a prolonged perturbation of the deep-crustal geotherm, which started long before the onset of intrusion of the Mafic Complex, or (2) corresponded to the intrusion of the first sills of the Mafic Complex, or (3) was related to an earlier, independent thermal pulse