Intraspecific structure of the Coregonus lavaretus complex in water bodies of Siberia: a case of postglacial allopatric origin of Yukagirian whitefish

The results of morphological and genetic analyses of forms/species of the Coregonus lavaretus pidschian (Gmelin, 1789) complex from the Indigirka and Kolyma river basins are presented in the context of there being recent postglacial speciation events. It has been found that the studied whitefishes belong to the sparsely rakered and low lateral-line forms and have previously been described as Coregonus lavaretus pidschian n. jucagiricus Drjagin (Berg), 1932. Based on these characters, this whitefish does not differ from most Arctic whitefish populations (in particular from Coregonus lavaretus glacialis Kirillov, 1972). Analysis of variability of the ND1 gene (mtDNA) showed that whitefishes from the Indigirka and Kolyma basins belong to a distant phylogenetic lineage, which is significantly different from all previously studied whitefish lineages from the Ob, Yenisei, Lena, Anadyr, and Amur river basins. Analysis of variability of the ITS1 fragment (nDNA) showed that all studied forms/species (from Ob River to Amur River basins), including C. l. pidschian n. jucagiricus, have a tandem arrangement of two identical nucleotide fragments and very similar nucleotide composition of the ITS1 region. Based on contemporary data, this phylogenetic lineage of the C. pidschian complex could be considered a young postglacial allopatric species.info:eu-repo/semantics/acceptedVersio

Editorial to the special issue in Fundamental and Applied Limnology: Biology and Management of Coregonid Fishes – 12th ISBMCF

Editorial

Phylogeny, Distribution, and Biology of Pygmy Whitefish (<i>Prosopium coulterii</i>) in the Beringia Region (Chukotka)

The pygmy whitefish Prosopium coulterii (C. H. Eigenmann & R. S. Eigenmann, 1892) is a freshwater fish with a highly disjunct distribution ranging from the middle part of North America to Chukotka. There is still no consensus regarding its phylogeny and dispersal history due to limited information from the Chukotkan part of the range. We investigated 22 lakes over Chukotka and found a much broader distribution than it was previously thought. Pygmy whitefish was found to be a common species in the lakes that belong to rivers draining into the Arctic. Cytochrome B, cytochrome oxidase subunit 1, and ATP synthase F0 subunit 6 mitochondrial sites were analyzed from 25 samples to reconstruct the phylogenetic history of pygmy whitefish. Two haplogroups belonging to the east and west Chukotkan ranges were identified; both groups are closely related to Alaskan pigmy whitefish and distant from the Cascadia-Mackenzie (Peace) populations. Combining the distribution patterns, phylogenetic network topology, and the contemporary knowledge on the glaciation history of the region, we suggest a possible colonization pathway over Beringia region and beyond it. The basic biological characteristics (fork length, number of gill rakers, and pyloric caeca, age structure, and feeding) are also presented to characterize the populations over the investigated range

The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies). Cryptic refugia as stepping stones to the west?

Boreal species were repeatedly exposed to ice ages and went through cycles of contraction and expansion while sister species alternated periods of contact and isolation. The resulting genetic structure is consequently complex, and demographic inferences are intrinsically challenging. The range of Norway spruce (Picea abies) and Siberian spruce (Picea obovata) covers most of northern Eurasia; yet their geographical limits and histories remain poorly understood. To delineate the hybrid zone between the two species and reconstruct their joint demographic history, we analysed variation at nuclear SSR and mitochondrial DNA in 102 and 88 populations, respectively. The dynamics of the hybrid zone was analysed with approximate Bayesian computation (ABC) followed by posterior predictive structure plot reconstruction and the presence of barriers across the range tested with estimated effective migration surfaces. To estimate the divergence time between the two species, nuclear sequences from two well-separated populations of each species were analysed with ABC. Two main barriers divide the range of the two species: one corresponds to the hybrid zone between them, and the other separates the southern and northern domains of Norway spruce. The hybrid zone is centred on the Urals, but the genetic impact of Siberian spruce extends further west. The joint distribution of mitochondrial and nuclear variation indicates an introgression of mitochondrial DNA from Norway spruce into Siberian spruce. Overall, our data reveal a demographic history where the two species interacted frequently and where migrants originating from the Urals and the West Siberian Plain recolonized northern Russia and Scandinavia using scattered refugial populations of Norway spruce as stepping stones towards the west

Data from: The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west?

Boreal species were repeatedly exposed to ice ages and went through cycles of contraction and expansion while sister species alternated periods of contact and isolation. The resulting genetic structure is consequently complex, and demographic inferences are intrinsically challenging. The range of Norway spruce (Picea abies) and Siberian spruce (Picea obovata) covers most of northern Eurasia; yet their geographical limits and histories remain poorly understood. To delineate the hybrid zone between the two species and reconstruct their joint demographic history, we analysed variation at nuclear SSR and mitochondrial DNA in 102 and 88 populations, respectively. The dynamics of the hybrid zone was analysed with approximate Bayesian computation (ABC) followed by posterior predictive structure plot reconstruction and the presence of barriers across the range tested with estimated effective migration surfaces. To estimate the divergence time between the two species, nuclear sequences from two well-separated populations of each species were analysed with ABC. Two main barriers divide the range of the two species: one corresponds to the hybrid zone between them, and the other separates the southern and northern domains of Norway spruce. The hybrid zone is centred on the Urals, but the genetic impact of Siberian spruce extends further west. The joint distribution of mitochondrial and nuclear variation indicates an introgression of mitochondrial DNA from Norway spruce into Siberian spruce. Overall, our data reveal a demographic history where the two species interacted frequently and where migrants originating from the Urals and the West Siberian Plain recolonized northern Russia and Scandinavia using scattered refugial populations of Norway spruce as stepping stones towards the west

The role of the Caucasus, Carpathian, and Dinaric–Balkan regions in preserving wolf genetic diversity

Mountain regions have long been important for maintaining populations and genetic diversity of wild species, especially those species that require large areas to sustain viable populations. We examined wolves (Canis lupus) in the Caucasus, Carpathian, and Dinaric–Balkan regions, expecting these persistent populations to contain high genetic diversity and an overlap of the major haplogroups detected in earlier broad-scale investigations. We analyzed 926 mitochondrial DNA control region sequences, including 533 new samples whose geographic distribution allowed us to reduce sampling gaps observed in previous broad-scale studies. We estimated genetic variability, population structure, and phylogeographic relationships to evaluate the diversity and connectivity of populations throughout the study regions. We detected haplogroups H1 and H2 that overlapped across the study regions. Haplogroup H1 can be divided into three subgroups: H1A and H1B that partially overlap throughout the study regions, and H1C that was found only in wolves from Armenia. Haplogroup H2 was largely confined to the Carpathian and Dinaric–Balkan regions. Our analyses of population structure partly concurred with the haplogroup distribution and produced four major genetic clusters. Our results demonstrated high genetic diversity within the study regions, supporting their role in maintaining intraspecific variability in wolves and other species that require large areas to sustain viable populations. The unique diversity and north–south structure observed within the Caucasus emphasize the need for further research and conservation efforts in this highly biodiverse region. Our findings highlight the role of broad-scale planning in conserving evolutionary processes in this and other transboundary areas.</p

Tsuda_Picea_sampleInfo_2016

Tsuda_Picea_sampleInfo_201

SSR genotypes of Picea abies and P. obovata

Tsuda_Pabies_obovata.txt: The input file of STRUCTURE analysis based on 10loci of 1599 individuals. Missing data is coded as -9. Tsuda_Pabies_obovata_sampleInfo.xlsx: This file includes a list of population code, group, longitude (E) and latitude (N) which are corresponding to "Tsuda_Pabies_obovata.txt"